Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GO596_RS03465 Genome accession   NZ_CP046628
Coordinates   679907..680500 (+) Length   197 a.a.
NCBI ID   WP_024344431.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 674907..685500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03450 (GO596_03450) - 674939..675292 (+) 354 WP_157339200.1 YlbF family regulator -
  GO596_RS03455 (GO596_03455) hexA 675279..677849 (+) 2571 WP_157339201.1 DNA mismatch repair protein MutS Machinery gene
  GO596_RS03460 (GO596_03460) hexB 677963..679906 (+) 1944 WP_027968297.1 DNA mismatch repair endonuclease MutL Machinery gene
  GO596_RS03465 (GO596_03465) ruvA 679907..680500 (+) 594 WP_024344431.1 Holliday junction branch migration protein RuvA Machinery gene
  GO596_RS03470 (GO596_03470) - 680530..681087 (+) 558 WP_162496024.1 DNA-3-methyladenine glycosylase I -
  GO596_RS03475 (GO596_03475) - 681210..682412 (+) 1203 WP_157339202.1 MFS transporter -
  GO596_RS03480 (GO596_03480) cinA 682526..683785 (+) 1260 WP_157339203.1 competence/damage-inducible protein A Machinery gene
  GO596_RS03485 (GO596_03485) recA 683835..684989 (+) 1155 WP_004233517.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21727.16 Da        Isoelectric Point: 5.0719

>NTDB_id=353976 GO596_RS03465 WP_024344431.1 679907..680500(+) (ruvA) [Streptococcus equinus strain CNU 77-23]
MYDYIKGKLTKITAKYIVVEAGGLGYIINVANPYSFSDLMNQDVQIYLHQVVREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKTAQQMVLDLAGKFADVSMENGLASQAKAVANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=353976 GO596_RS03465 WP_024344431.1 679907..680500(+) (ruvA) [Streptococcus equinus strain CNU 77-23]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCAAAATACATTGTCGTTGAAGCTGGAGGATTAGGCTATAT
TATCAATGTTGCTAATCCATACAGTTTTTCTGATTTGATGAATCAAGATGTTCAAATCTACCTTCATCAAGTTGTTCGAG
AAGATGCACAGCTTTTGTTTGGCTTTCATACAGAAGATGAAAAAGCAGTCTTTCTTAACCTTATTTCAGTTTCTGGAATT
GGTCCGACAACAGCGTTAGCGATTATCGCAGTGGATGATAATGAAGGTCTCGTAACTGCTATTGACAATAGTGATATTCG
TTATCTGATGAAATTTCCAAAAATCGGTAAAAAAACAGCTCAACAAATGGTGCTTGATTTAGCTGGTAAGTTTGCTGATG
TTTCTATGGAAAATGGCTTAGCTTCTCAGGCAAAAGCAGTGGCAAATGAACAGCTTGAAGAGGCCATGGAAGCTCTTTTG
GCACTTGGCTACAAGGCAGCAGAACTTAAGAAAATTCGTAAGTTCTTTGAAGGTACAAATGAAACCGCAGAACAATACAT
CAAATCAAGCCTTAAGATGTTGATGAAGGGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.687

100

0.69
  ruvA Streptococcus pneumoniae D39

68.687

100

0.69
  ruvA Streptococcus pneumoniae TIGR4

68.687

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.365

100

0.437