Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   GO596_RS03455 Genome accession   NZ_CP046628
Coordinates   675279..677849 (+) Length   856 a.a.
NCBI ID   WP_157339201.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 670279..682849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS03435 (GO596_03435) - 671055..672479 (+) 1425 Protein_600 PTS transporter subunit EIIC -
  GO596_RS03440 (GO596_03440) argS 672624..674315 (-) 1692 WP_074533438.1 arginine--tRNA ligase -
  GO596_RS03445 (GO596_03445) argR 674505..674942 (+) 438 WP_021143308.1 arginine repressor -
  GO596_RS03450 (GO596_03450) - 674939..675292 (+) 354 WP_157339200.1 YlbF family regulator -
  GO596_RS03455 (GO596_03455) hexA 675279..677849 (+) 2571 WP_157339201.1 DNA mismatch repair protein MutS Machinery gene
  GO596_RS03460 (GO596_03460) hexB 677963..679906 (+) 1944 WP_027968297.1 DNA mismatch repair endonuclease MutL Machinery gene
  GO596_RS03465 (GO596_03465) ruvA 679907..680500 (+) 594 WP_024344431.1 Holliday junction branch migration protein RuvA Machinery gene
  GO596_RS03470 (GO596_03470) - 680530..681087 (+) 558 WP_162496024.1 DNA-3-methyladenine glycosylase I -
  GO596_RS03475 (GO596_03475) - 681210..682412 (+) 1203 WP_157339202.1 MFS transporter -

Sequence


Protein


Download         Length: 856 a.a.        Molecular weight: 96016.33 Da        Isoelectric Point: 4.8701

>NTDB_id=353974 GO596_RS03455 WP_157339201.1 675279..677849(+) (hexA) [Streptococcus equinus strain CNU 77-23]
MAKDKISPGMQQYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAENPIPMAGVPYHSAQQYIDVLV
EMGYKVAIAEQMEDPKKAVGVVKREVVQVITPGTAVDSTKPDNANNFLVAIDSDGKTFGLAYMDVSTGEFYATSLSDFAS
LKSEILNLKAREIVVGYELSEEEKHSLVKQLNLLLSFEQERFEDVHLIDSNLASLEISAAEKLLQYVHTTQKRELSHLQK
LVHYEIKDYLQMSYTTKSSLDLLENARTSKKHGSLYWLLDETKTAMGMRLLRNWIDRPLVNREQIEERQNIIQVFLDNFF
ERSDLTDSLKGVYDIERLASRVSFGKANPKDLLQLGHTLGQVPTIKAILESFESPYLDKLVNSIDTLPELESLISSAIDP
DAQAVITEGSIIKTGFDETLDKYRKVMREGTSWIAEIEAKERAASGITNLKIDYNKKDGYYFHVTNSNLSLVPDYFFRKA
TLKNSERFGTAELAKIEGEMLEAREQSASLEYDIFMRVRAQVERYISRLQDLAKAISTVDVLQSLAVVAENNHYVRPTFN
DSHEIKIEKGRHAVVEKVMGTQEYIPNTITFGRNTNIQLITGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVSLPVFDA
IFTRIGAADDLISGQSTFMVEMMEANQAIKRASDKSLILFDELGRGTATYDGMALAQSIIEYIHDHIGAKTMFATHYHEL
TALSTTLTHLVNVHVATLERNGDVTFLHKIAEGPADKSYGIHVAKIAGLPEDLLQRADSILTKLESGAAQLHLTPEVDSE
PVATESEVSEPVVEQLSLFAEDSSNQEVIEALKKVDLMNLTPMQAMNVIYELKNML

Nucleotide


Download         Length: 2571 bp        

>NTDB_id=353974 GO596_RS03455 WP_157339201.1 675279..677849(+) (hexA) [Streptococcus equinus strain CNU 77-23]
ATGGCAAAAGATAAAATTTCTCCAGGCATGCAACAGTATTTGGATGTTAAAAAAGACTATCCAGATGCTTTTTTACTTTT
CCGCATGGGAGATTTTTACGAATTATTTTACGATGATGCAGTTAAGGCTGCACAGATTTTAGAGATTAGTTTGACTAGTC
GAAATAAAAATGCTGAAAATCCTATTCCAATGGCAGGGGTACCATATCACTCAGCTCAGCAATATATTGATGTCCTTGTT
GAAATGGGCTACAAAGTTGCGATTGCAGAACAAATGGAAGATCCCAAGAAAGCAGTCGGTGTTGTAAAACGTGAAGTTGT
TCAAGTCATTACGCCAGGTACGGCAGTTGATTCGACAAAACCTGACAATGCCAATAATTTCTTGGTGGCTATTGATTCTG
ATGGCAAGACTTTTGGTCTAGCTTACATGGATGTGTCGACAGGTGAGTTTTATGCGACAAGTCTGTCAGATTTTGCCAGT
CTTAAAAGTGAAATCCTAAACCTTAAAGCACGTGAGATTGTTGTTGGCTACGAACTTTCAGAAGAAGAAAAACACAGTCT
TGTTAAACAACTCAATTTGCTTTTATCGTTTGAACAAGAGCGTTTTGAAGATGTGCACTTGATTGATTCTAATTTGGCAT
CTTTGGAGATTTCAGCTGCTGAGAAATTACTACAGTACGTCCATACCACTCAAAAACGTGAGCTCAGCCATTTGCAAAAA
TTGGTTCACTATGAAATCAAAGATTATCTTCAAATGTCTTATACGACAAAATCAAGTCTTGATTTGTTAGAAAATGCACG
TACAAGCAAGAAACACGGTAGTCTTTATTGGTTGCTTGATGAGACAAAGACAGCTATGGGGATGCGTCTTTTGCGTAATT
GGATCGACCGTCCTTTGGTTAATCGAGAACAAATCGAAGAACGTCAAAATATCATTCAAGTTTTCTTAGACAATTTCTTT
GAGCGTAGTGATTTGACGGATAGTCTTAAGGGTGTTTATGATATTGAACGCTTGGCGAGTCGTGTGTCATTTGGTAAGGC
TAATCCAAAAGACCTTCTTCAACTTGGTCATACTTTGGGGCAAGTACCTACTATCAAGGCTATTTTGGAATCCTTTGAAA
GTCCATACCTTGACAAACTTGTCAACAGCATTGACACTCTTCCTGAGTTGGAATCATTGATTAGCTCTGCTATTGACCCA
GATGCTCAAGCTGTCATCACAGAAGGTAGCATCATTAAAACTGGTTTTGATGAGACTTTGGATAAATACCGCAAAGTCAT
GCGTGAAGGTACAAGCTGGATTGCTGAGATTGAAGCCAAAGAACGTGCCGCAAGTGGTATTACAAATCTAAAAATTGATT
ACAATAAAAAAGATGGCTATTATTTCCATGTCACAAATTCTAACCTTTCTTTGGTGCCAGATTATTTCTTCCGTAAAGCA
ACTTTGAAGAACTCAGAACGTTTTGGTACAGCAGAATTGGCTAAAATTGAAGGTGAAATGCTGGAAGCGCGTGAACAATC
AGCAAGCCTAGAATACGATATTTTCATGCGTGTTCGTGCGCAGGTGGAGCGCTATATTTCACGTTTGCAAGACTTAGCAA
AAGCTATTTCAACGGTCGATGTCTTACAAAGTTTAGCTGTGGTCGCTGAAAATAATCATTATGTGCGTCCAACTTTCAAC
GATAGCCATGAGATTAAGATTGAAAAAGGTCGTCACGCAGTCGTTGAAAAAGTCATGGGCACTCAAGAATATATTCCAAA
TACGATTACATTTGGTAGAAATACTAATATTCAGCTGATTACTGGTCCTAATATGAGTGGTAAGTCAACTTATATGCGTC
AGCTAGCATTGACTGTTATCATGGCACAAATGGGGTCTTATGTCGCTGCTGAAAGTGTCAGTCTACCAGTCTTCGATGCT
ATTTTCACACGTATTGGTGCAGCTGATGACTTGATTTCAGGTCAGTCAACCTTCATGGTAGAAATGATGGAAGCTAACCA
AGCTATTAAACGTGCTAGTGATAAGTCTTTGATTCTCTTTGATGAATTGGGACGTGGTACGGCAACCTATGATGGTATGG
CTTTGGCACAATCTATTATTGAGTATATTCATGACCATATTGGGGCTAAAACGATGTTTGCAACGCACTATCATGAATTG
ACAGCTCTGTCAACGACCTTGACACACCTTGTCAACGTCCATGTTGCAACCCTTGAACGTAATGGTGATGTGACTTTTCT
TCACAAGATTGCAGAAGGACCCGCAGATAAATCCTATGGTATTCACGTTGCGAAAATTGCAGGCTTACCAGAAGATTTAT
TACAACGTGCAGACAGCATTTTAACCAAACTTGAATCAGGTGCTGCGCAGCTTCATTTGACACCAGAAGTTGACAGTGAA
CCAGTAGCAACTGAATCAGAAGTTTCAGAACCTGTAGTGGAGCAATTAAGTCTTTTTGCAGAAGATTCTTCTAATCAAGA
AGTGATTGAAGCACTTAAGAAAGTTGATTTGATGAACTTGACACCTATGCAGGCTATGAATGTCATCTATGAATTGAAAA
ATATGTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

72.196

100

0.722

  mutS Pseudomonas stutzeri strain ATCC 17587

37.716

100

0.382


Multiple sequence alignment