Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   GO596_RS00675 Genome accession   NZ_CP046628
Coordinates   132795..133460 (-) Length   221 a.a.
NCBI ID   WP_157339041.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 127795..138460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS00670 (GO596_00670) hpf 132170..132718 (-) 549 WP_024344660.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GO596_RS00675 (GO596_00675) comFC/cflB 132795..133460 (-) 666 WP_157339041.1 ComF family protein Machinery gene
  GO596_RS00680 (GO596_00680) comFA/cflA 133460..134758 (-) 1299 WP_157339042.1 DEAD/DEAH box helicase Machinery gene
  GO596_RS00685 (GO596_00685) - 134813..135439 (+) 627 WP_157339043.1 YigZ family protein -
  GO596_RS00690 (GO596_00690) cysK 135537..136466 (+) 930 WP_021141798.1 cysteine synthase A -
  GO596_RS00695 (GO596_00695) - 136536..136892 (-) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -
  GO596_RS00700 (GO596_00700) - 136892..138292 (-) 1401 WP_029876003.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25469.44 Da        Isoelectric Point: 9.0472

>NTDB_id=353937 GO596_RS00675 WP_157339041.1 132795..133460(-) (comFC/cflB) [Streptococcus equinus strain CNU 77-23]
MEKCLLCDQLFLEEETFLGIISIQKNQRNICPDCLAAFEKIGDKHCPTCYRNGCETQCKDCQKWEKEGHSVKHQAIFTYN
DAMKNYFSKYKFQGDVALGAIFSRVLKRKIKPYKNYSIVPVPLSRERMTERKFNQVTALLDASGIAYQEILSKKNITKQS
DKNRKERLESQCPFHVKPDSNIPKNILIIDDIYTTGATLKGIYHLLYENGAQNVKSLTIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=353937 GO596_RS00675 WP_157339041.1 132795..133460(-) (comFC/cflB) [Streptococcus equinus strain CNU 77-23]
ATGGAAAAGTGTTTGCTATGTGACCAATTATTTCTTGAAGAAGAAACTTTTTTGGGTATCATTTCTATTCAAAAAAATCA
AAGAAATATTTGTCCTGATTGTCTCGCTGCTTTTGAAAAAATAGGAGATAAGCACTGCCCAACTTGTTATCGAAATGGTT
GTGAAACGCAGTGTAAAGATTGTCAAAAATGGGAAAAGGAAGGGCATTCTGTCAAGCATCAGGCCATTTTTACCTATAAT
GATGCCATGAAAAATTATTTTTCAAAGTACAAATTTCAAGGAGACGTAGCACTTGGTGCAATTTTTTCTAGAGTGCTTAA
GAGAAAAATAAAGCCGTACAAAAATTACAGTATCGTGCCAGTCCCTTTAAGTAGAGAGCGCATGACGGAACGTAAATTTA
ATCAAGTTACTGCCTTATTGGACGCTTCTGGAATAGCCTATCAAGAAATTTTATCAAAGAAAAATATCACTAAACAATCA
GATAAAAACAGAAAAGAAAGGCTTGAAAGCCAGTGTCCATTTCATGTCAAGCCAGATAGTAATATTCCCAAAAATATTTT
AATCATTGACGACATCTATACGACTGGCGCTACACTAAAAGGCATTTATCATCTTCTTTATGAAAACGGTGCACAGAATG
TAAAAAGTTTAACAATTGCACGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

47.489

99.095

0.471
  comFC/cflB Streptococcus mitis NCTC 12261

46.575

99.095

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae D39

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae R6

46.119

99.095

0.457
  comFC/cflB Streptococcus pneumoniae TIGR4

46.119

99.095

0.457
  comFC Bacillus subtilis subsp. subtilis str. 168

36.404

100

0.376