Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E4T55_RS04915 Genome accession   NZ_CP038273
Coordinates   1123727..1125238 (+) Length   503 a.a.
NCBI ID   WP_058500456.1    Uniprot ID   A0A0W0WQW9
Organism   Legionella israelensis strain Bercovier 4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1118727..1130238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T55_RS04875 (E4T55_04875) - 1118930..1119376 (-) 447 WP_058500464.1 DUF1499 domain-containing protein -
  E4T55_RS04880 (E4T55_04880) - 1119485..1120162 (+) 678 WP_058500463.1 TVP38/TMEM64 family protein -
  E4T55_RS04885 (E4T55_04885) - 1120260..1121069 (-) 810 WP_058500462.1 aminotransferase class IV -
  E4T55_RS04890 (E4T55_04890) - 1121157..1121336 (-) 180 WP_058500461.1 hypothetical protein -
  E4T55_RS04895 (E4T55_04895) - 1121584..1122159 (+) 576 WP_058500460.1 5-formyltetrahydrofolate cyclo-ligase -
  E4T55_RS04900 (E4T55_04900) - 1122156..1122620 (+) 465 WP_058500459.1 EVE domain-containing protein -
  E4T55_RS04905 (E4T55_04905) - 1122769..1123107 (-) 339 WP_058500529.1 P-II family nitrogen regulator -
  E4T55_RS04910 (E4T55_04910) - 1123426..1123689 (+) 264 WP_058500457.1 accessory factor UbiK family protein -
  E4T55_RS04915 (E4T55_04915) comM 1123727..1125238 (+) 1512 WP_058500456.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E4T55_RS04920 (E4T55_04920) - 1125393..1126778 (-) 1386 WP_058500455.1 phosphomannomutase/phosphoglucomutase -
  E4T55_RS04925 (E4T55_04925) dut 1126779..1127237 (-) 459 WP_058500454.1 dUTP diphosphatase -
  E4T55_RS04930 (E4T55_04930) coaBC 1127372..1128571 (-) 1200 WP_058500453.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E4T55_RS04935 (E4T55_04935) radC 1128639..1129322 (+) 684 WP_058500452.1 DNA repair protein RadC -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55112.56 Da        Isoelectric Point: 8.2867

>NTDB_id=353063 E4T55_RS04915 WP_058500456.1 1123727..1125238(+) (comM) [Legionella israelensis strain Bercovier 4]
MNLAIIKTRSAVGIVARSVSVEVHLSNGLPAFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLAPADLPKSGSG
FDLPIAIGILAASGQISQQKLADHEFIGELALNGHLRGVTAIIPIVLAAFKEKQQLIIAHDNEEEASLAGHQNVYTAHHL
REVCSYLCRDTTLQTLPPRPEVTRDDQKLDWSEVKGQPHAKHALEIAACGGHSVLLSGAPGSGKTMLAKRFATLLPDLSE
NEALECAAIHSIRGKLPNFQQWRIPPFRSPHHTASPVALVGGGNPPKPGEISLAHCGVLFLDELPEFNRHVLETLREPLE
SGHICISRAAIQMEFPAHFQLIAAMNPCPCGQWGNPQADCLCSPDRISRYLGKLSAPLLDRIDMQIHVYPLSKEELIKPN
EQKENQSAVLREKVASIRKTQWLRQDCLNAHLSAKACEQLCSLGSPEQQFLSKAMDKLKLSARSYHRLLKVARTIADMKQ
QNSVSVSHLQQALSFKQALQAPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=353063 E4T55_RS04915 WP_058500456.1 1123727..1125238(+) (comM) [Legionella israelensis strain Bercovier 4]
ATGAACCTCGCCATCATTAAAACGCGCAGTGCTGTGGGCATTGTCGCACGATCAGTCTCTGTAGAAGTTCACCTCTCCAA
TGGTCTTCCTGCTTTCACCATTGTAGGACTGGCTGAAACGGCTGTGAAGGAAAGCAAGGATCGCGTGCGCAGTGCCATTA
TCAATAGCCAGTTTGAATTTCCCTGTCGTAAAATCACGGTCAATCTGGCTCCAGCGGATTTACCCAAGTCCGGTAGTGGT
TTTGATTTACCCATTGCTATCGGCATTCTTGCAGCTTCCGGACAAATTTCCCAACAAAAATTAGCCGACCATGAGTTCAT
TGGCGAATTGGCGCTCAATGGCCACCTGAGAGGCGTCACAGCCATCATTCCTATTGTTCTTGCTGCCTTTAAAGAGAAAC
AACAACTCATCATCGCCCATGATAATGAGGAAGAAGCTTCTCTTGCAGGACATCAAAACGTCTACACAGCACATCATCTA
AGAGAAGTCTGCAGTTATCTATGCCGGGATACAACCTTACAAACCCTGCCACCCAGACCTGAAGTTACTCGCGATGATCA
AAAACTCGACTGGTCAGAGGTTAAAGGTCAGCCTCACGCGAAACATGCCCTGGAAATAGCAGCCTGTGGAGGCCACAGCG
TTTTATTAAGCGGCGCGCCAGGCAGCGGTAAAACCATGCTGGCAAAACGATTTGCCACACTTCTGCCTGATCTTTCGGAA
AATGAAGCGCTGGAATGTGCGGCTATTCACTCTATTCGCGGCAAGTTGCCTAATTTTCAGCAATGGCGAATACCGCCTTT
TCGCTCACCGCATCACACGGCCTCACCTGTTGCTCTTGTCGGAGGTGGTAATCCACCTAAACCCGGCGAAATTTCTCTCG
CTCATTGTGGTGTTTTGTTTCTTGACGAATTACCGGAATTTAATCGCCATGTTCTGGAAACTTTAAGAGAACCTTTGGAA
TCTGGTCATATTTGTATTTCCAGAGCAGCTATACAAATGGAATTTCCAGCTCATTTTCAACTCATTGCCGCAATGAATCC
TTGTCCTTGCGGTCAGTGGGGAAATCCTCAGGCTGACTGCTTGTGCAGCCCCGATCGCATCAGTCGTTATCTTGGTAAAT
TATCCGCGCCTTTACTGGATCGTATTGATATGCAAATTCATGTTTATCCCTTGTCAAAAGAAGAACTCATCAAGCCTAAT
GAACAAAAGGAAAATCAAAGTGCTGTCCTTAGAGAAAAAGTGGCAAGCATAAGAAAAACACAATGGTTGCGTCAGGATTG
CCTGAATGCGCATTTAAGCGCTAAAGCTTGCGAACAACTTTGCTCACTTGGATCGCCTGAGCAGCAATTTCTAAGCAAGG
CCATGGACAAACTCAAATTGTCTGCTCGCAGTTATCATCGCTTACTCAAAGTTGCCCGAACCATAGCCGATATGAAGCAA
CAAAACAGCGTGTCAGTTTCTCATCTGCAACAGGCCTTGTCATTTAAACAAGCCCTACAAGCACCCAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0WQW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

74.751

100

0.748
  comM Legionella pneumophila strain ERS1305867

74.751

100

0.748
  comM Haemophilus influenzae Rd KW20

50.696

100

0.507
  comM Glaesserella parasuis strain SC1401

50.595

100

0.507
  comM Vibrio cholerae strain A1552

51.21

98.608

0.505
  comM Vibrio campbellii strain DS40M4

50.201

99.006

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.058

98.807

0.425

Multiple sequence alignment