Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E4T54_RS07850 Genome accession   NZ_CP038271
Coordinates   1763580..1765103 (-) Length   507 a.a.
NCBI ID   WP_028385986.1    Uniprot ID   A0A0W0TUF5
Organism   Legionella geestiana strain 1308     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1758580..1770103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T54_RS07830 (E4T54_07830) - 1759814..1761340 (-) 1527 WP_035901912.1 FMN-binding glutamate synthase family protein -
  E4T54_RS07835 (E4T54_07835) - 1761661..1762224 (+) 564 WP_028385989.1 YqgE/AlgH family protein -
  E4T54_RS07840 (E4T54_07840) ruvX 1762284..1762691 (+) 408 WP_028385988.1 Holliday junction resolvase RuvX -
  E4T54_RS07845 (E4T54_07845) - 1762698..1763594 (+) 897 WP_028385987.1 aspartate carbamoyltransferase catalytic subunit -
  E4T54_RS07850 (E4T54_07850) comM 1763580..1765103 (-) 1524 WP_028385986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E4T54_RS07855 (E4T54_07855) - 1765145..1765387 (-) 243 WP_028385985.1 accessory factor UbiK family protein -
  E4T54_RS07860 (E4T54_07860) - 1765509..1765847 (+) 339 WP_028385984.1 P-II family nitrogen regulator -
  E4T54_RS07865 (E4T54_07865) - 1765951..1766424 (-) 474 WP_028385983.1 EVE domain-containing protein -
  E4T54_RS07870 (E4T54_07870) - 1766421..1766984 (-) 564 WP_035901908.1 5-formyltetrahydrofolate cyclo-ligase -
  E4T54_RS07875 (E4T54_07875) - 1767214..1767399 (+) 186 WP_028385981.1 hypothetical protein -
  E4T54_RS07880 (E4T54_07880) - 1767405..1768178 (+) 774 WP_028385980.1 aminotransferase class IV -
  E4T54_RS07885 (E4T54_07885) - 1768242..1769789 (+) 1548 WP_051550834.1 M14 family zinc carboxypeptidase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54468.43 Da        Isoelectric Point: 7.4922

>NTDB_id=353044 E4T54_RS07850 WP_028385986.1 1763580..1765103(-) (comM) [Legionella geestiana strain 1308]
MTSHLAFSFTRSIIGMQAKTVSVEVHISPGLPAFTIVGLPETAVRESRDRVRSAIQNSQFEFPWRHITVNLAPADLPKTG
SGFDLPIAIGILAASGQIPPGCLGDYEFIGELALSGNLRGVPGILPAVIAAKQDGRHLIIAHENGAEAGLADTGGVSAAG
SLREVCAFLCGDAEPAPLPRQAAPAIDEGAPDWSDVKGQQHAKYALEIAAAGGHSVLMSGTPGSGKTMLARRFSTLLPWL
DETRALECAAIRSVHGRPLDYSRWREPPFRAPHHTASAVAMVGGGNPPKPGEISLAHHGVLFLDELPEFHKQVLETLREP
LESGTVHISRAAATAEFPARFQLVAAMNPCPCGQWGNPNATCVCPPDKITRYFSRLSAPLMDRIDMHLAIQPVKLELLTA
SKPESVRESPRIREQVEALQRVQFTRQGCLNAALGPAECESVCALDEAGRTFVAQAMERLKLSARSFHRLLKVARTIADK
KEEAAVSVSALQQALTFRDNLRPSVRQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=353044 E4T54_RS07850 WP_028385986.1 1763580..1765103(-) (comM) [Legionella geestiana strain 1308]
ATGACATCGCACCTTGCGTTCAGTTTCACACGCAGCATTATCGGCATGCAGGCTAAAACCGTTTCGGTAGAAGTGCATAT
TTCACCCGGCCTGCCCGCTTTTACCATTGTCGGCCTGCCGGAAACGGCGGTGCGCGAAAGCCGCGACCGGGTCAGAAGCG
CCATCCAGAACAGTCAATTTGAATTTCCGTGGCGCCATATTACCGTTAATCTGGCACCTGCCGACCTCCCCAAAACCGGC
AGCGGTTTTGATCTGCCGATTGCCATCGGCATACTTGCCGCCTCCGGCCAGATACCGCCGGGCTGCCTTGGCGATTATGA
ATTTATTGGCGAGCTGGCCTTAAGCGGCAACCTTCGAGGAGTGCCTGGTATTCTGCCTGCGGTCATTGCAGCAAAACAGG
ACGGTCGGCATCTGATTATCGCTCACGAAAATGGCGCGGAAGCGGGGCTTGCGGATACAGGCGGCGTATCAGCCGCGGGT
TCCCTGCGCGAAGTATGCGCCTTTTTGTGCGGGGACGCAGAACCTGCCCCTCTGCCCCGACAGGCCGCGCCGGCAATTGA
CGAAGGCGCGCCTGACTGGTCGGATGTGAAAGGCCAGCAGCACGCCAAATATGCGCTCGAAATTGCCGCAGCCGGTGGAC
ACAGTGTGCTCATGAGCGGCACGCCTGGCAGCGGTAAAACCATGCTGGCACGCCGCTTCAGCACCCTCCTGCCATGGCTT
GATGAAACGCGGGCGCTTGAATGCGCGGCCATCCGCTCCGTTCATGGCCGTCCGCTCGATTATTCCCGCTGGCGTGAGCC
ACCGTTTCGCGCCCCTCACCATACTGCATCGGCCGTTGCCATGGTCGGCGGCGGTAATCCCCCAAAACCTGGCGAGATTT
CACTCGCGCACCATGGCGTGCTGTTTCTGGATGAATTGCCGGAATTTCATAAACAGGTGCTGGAAACCCTGCGCGAGCCG
CTTGAGTCTGGCACCGTACATATTTCACGTGCCGCGGCCACGGCTGAATTCCCCGCGCGCTTTCAACTGGTAGCGGCGAT
GAATCCCTGCCCGTGCGGTCAATGGGGCAACCCCAATGCCACCTGCGTATGCCCGCCCGATAAAATCACCCGCTATTTCA
GCAGGCTCTCAGCACCTCTGATGGATCGCATCGACATGCATCTGGCCATTCAACCGGTCAAGCTGGAACTCCTGACGGCA
TCAAAGCCCGAGAGCGTGCGGGAAAGCCCGCGTATTCGAGAGCAGGTCGAAGCGTTGCAGAGGGTGCAGTTTACGCGCCA
GGGATGCCTCAACGCGGCCCTGGGGCCTGCTGAATGTGAAAGCGTGTGCGCACTCGATGAGGCCGGGCGAACGTTTGTGG
CGCAGGCGATGGAGCGCTTAAAGCTCTCTGCACGCAGTTTTCACCGCCTGCTGAAGGTGGCGCGTACGATTGCCGATAAA
AAGGAAGAAGCGGCGGTTTCCGTATCCGCCCTTCAGCAGGCGCTGACCTTTCGTGACAATCTGCGCCCCTCAGTGCGACA
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)

Subunit ChlI of Mg-chelatase (ChlI)

(23-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0TUF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

63.179

98.028

0.619
  comM Legionella pneumophila str. Paris

63.179

98.028

0.619
  comM Vibrio cholerae strain A1552

51.411

97.83

0.503
  comM Vibrio campbellii strain DS40M4

49.699

98.422

0.489
  comM Haemophilus influenzae Rd KW20

48.718

100

0.487
  comM Glaesserella parasuis strain SC1401

47.695

98.422

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.227

99.014

0.428

Multiple sequence alignment