Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SaO55_RS11150 Genome accession   NZ_CP038268
Coordinates   2155909..2156304 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O55 isolate B118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2150909..2161304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO55_RS11125 thiE 2151508..2152149 (-) 642 WP_000483148.1 thiamine phosphate synthase -
  SaO55_RS11130 (SaO55_2059) thiM 2152151..2152942 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  SaO55_RS11135 (SaO55_2060) thiD 2152926..2153756 (-) 831 WP_000594944.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SaO55_RS11140 (SaO55_2061) tenA 2153749..2154438 (-) 690 WP_000396078.1 thiaminase II -
  SaO55_RS11145 (SaO55_2063) sceD 2154825..2155520 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  SaO55_RS11150 (SaO55_2064) ssb 2155909..2156304 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SaO55_RS11155 (SaO55_2065) - 2156498..2156938 (+) 441 WP_000846746.1 YwpF-like family protein -
  SaO55_RS11160 (SaO55_2066) fabZ 2156995..2157435 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SaO55_RS11165 (SaO55_2067) murA 2157469..2158734 (-) 1266 WP_000358001.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SaO55_RS11170 (SaO55_2068) - 2158845..2159078 (-) 234 WP_000384523.1 DUF1146 family protein -
  SaO55_RS11190 (SaO55_2069) - 2159839..2160243 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=352941 SaO55_RS11150 WP_000932694.1 2155909..2156304(-) (ssb) [Staphylococcus aureus strain O55 isolate B118]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=352941 SaO55_RS11150 WP_000932694.1 2155909..2156304(-) (ssb) [Staphylococcus aureus strain O55 isolate B118]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment