Detailed information NTG0352875

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: E4K03_RS11980
• Genome accession: NZ_CP038262
• Coordinates: 2468281..2468982 (-)
• Length: 233 a.a.
• NCBI ID: WP_109267335.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain LEV1449/17Ec
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2463281..2473982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4K03_RS11950 (E4K03_11950)	-	2463574..2464017 (-)	444	WP_046127748.1	SRPBCC family protein	-
E4K03_RS11955 (E4K03_11955)	tadA	2464087..2464590 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
E4K03_RS11960 (E4K03_11960)	-	2464611..2465735 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
E4K03_RS11965 (E4K03_11965)	ung	2465732..2466445 (-)	714	WP_001177530.1	uracil-DNA glycosylase	-
E4K03_RS11970 (E4K03_11970)	-	2466496..2467092 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
E4K03_RS11975 (E4K03_11975)	gspK	2467322..2468281 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
E4K03_RS11980 (E4K03_11980)	xcpW	2468281..2468982 (-)	702	WP_109267335.1	type II secretion system minor pseudopilin GspJ	Machinery gene
E4K03_RS11985 (E4K03_11985)	xcpV	2468982..2469362 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
E4K03_RS11990 (E4K03_11990)	-	2469352..2469906 (-)	555	WP_004841361.1	type II secretion system protein	-
E4K03_RS11995 (E4K03_11995)	-	2469916..2470524 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
E4K03_RS12000 (E4K03_12000)	-	2470562..2471335 (-)	774	WP_000497298.1	TatD family hydrolase	-
E4K03_RS12005 (E4K03_12005)	-	2471353..2471694 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
E4K03_RS12010 (E4K03_12010)	-	2471706..2472686 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
E4K03_RS12015 (E4K03_12015)	kdsB	2472698..2473459 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26655.71 Da
• Isoelectric Point: 9.6949

>NTDB_id=352875 E4K03_RS11980 WP_109267335.1 2468281..2468982(-) (xcpW) [Acinetobacter baumannii strain LEV1449/17Ec]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADKKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNL

Nucleotide

• Length: 702 bp

>NTDB_id=352875 E4K03_RS11980 WP_109267335.1 2468281..2468982(-) (xcpW) [Acinetobacter baumannii strain LEV1449/17Ec]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACAAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTTATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.138	99.571	0.987