Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E3983_RS02715 Genome accession   NZ_CP038254
Coordinates   598420..599931 (-) Length   503 a.a.
NCBI ID   WP_135059774.1    Uniprot ID   -
Organism   Legionella israelensis strain HL-0427-4011     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593420..604931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3983_RS02695 (E3983_02695) radC 594335..595018 (-) 684 WP_135059771.1 DNA repair protein RadC -
  E3983_RS02700 (E3983_02700) coaBC 595086..596285 (+) 1200 WP_135059772.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E3983_RS02705 (E3983_02705) dut 596421..596879 (+) 459 WP_058500454.1 dUTP diphosphatase -
  E3983_RS02710 (E3983_02710) - 596880..598265 (+) 1386 WP_135059773.1 phosphomannomutase/phosphoglucomutase -
  E3983_RS02715 (E3983_02715) comM 598420..599931 (-) 1512 WP_135059774.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E3983_RS02720 (E3983_02720) - 599969..600232 (-) 264 WP_058500457.1 accessory factor UbiK family protein -
  E3983_RS02725 (E3983_02725) - 600551..600889 (+) 339 WP_135059775.1 P-II family nitrogen regulator -
  E3983_RS02730 (E3983_02730) - 601038..601502 (-) 465 WP_058500459.1 EVE domain-containing protein -
  E3983_RS02735 (E3983_02735) - 601499..602074 (-) 576 WP_135061413.1 5-formyltetrahydrofolate cyclo-ligase -
  E3983_RS02740 (E3983_02740) - 602322..602501 (+) 180 WP_135059776.1 hypothetical protein -
  E3983_RS02745 (E3983_02745) - 602589..603398 (+) 810 WP_135059777.1 aminotransferase class IV -
  E3983_RS02750 (E3983_02750) - 603496..604173 (-) 678 WP_058500463.1 TVP38/TMEM64 family protein -
  E3983_RS02755 (E3983_02755) - 604282..604728 (+) 447 WP_058500464.1 DUF1499 domain-containing protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55052.51 Da        Isoelectric Point: 8.2867

>NTDB_id=352760 E3983_RS02715 WP_135059774.1 598420..599931(-) (comM) [Legionella israelensis strain HL-0427-4011]
MNLAIIKTRSAVGIVARSVSVEVHLSNGLPAFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLAPADLPKSGSG
FDLPIAIGILAASGQISQQKLADHEFIGELALNGHLRGVAAIIPIVLAAFKEKQQLIIAHDNEEEASLAGHQNVYTAHHL
REVCSYLCRDTTLQTLPPRPEVTRDDQKLDWSEVKGQPHAKHALEIAACGGHSVLLSGAPGSGKTMLAKRFATLLPDLSE
NEALECAAIHSIRGKLPNFQQWRIPPFRSPHHTASPVALVGGGNPPKPGEISLAHCGVLFLDELPEFNRHVLETLREPLE
SGHICISRAAIQMEFPAHFQLIAAMNPCPCGQWGNPQADCLCSPDRIGRYLGKLSAPLLDRIDMQIHVYPLSKEELIKPN
EQKENQSAVLREKVASIRKTQWLRQDCLNAHLSAKACEQLCSLGSPEQQFLSKAMDKLKLSARSYHRLLKVARTIADMKQ
QNSVSVSHLQQALSFKQALQAPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=352760 E3983_RS02715 WP_135059774.1 598420..599931(-) (comM) [Legionella israelensis strain HL-0427-4011]
ATGAACCTCGCCATCATTAAAACGCGCAGTGCTGTGGGCATTGTCGCACGATCAGTCTCTGTAGAAGTTCACCTCTCCAA
TGGTCTTCCTGCTTTCACCATTGTGGGACTGGCTGAAACGGCTGTGAAGGAAAGCAAGGATCGCGTGCGCAGTGCCATTA
TCAATAGCCAGTTTGAATTTCCCTGTCGTAAAATCACGGTCAATCTGGCTCCAGCGGATTTACCCAAGTCCGGTAGTGGC
TTTGATTTACCCATTGCTATCGGCATTCTTGCAGCTTCCGGACAAATTTCTCAACAAAAATTAGCCGACCATGAGTTCAT
TGGCGAATTGGCGCTCAATGGCCACCTGAGAGGCGTCGCAGCCATCATTCCTATTGTTCTTGCTGCCTTTAAAGAGAAAC
AACAACTCATCATCGCTCATGATAATGAGGAAGAAGCTTCTCTTGCAGGACATCAAAACGTCTACACAGCACATCATCTA
AGAGAAGTCTGCAGTTATCTATGCCGGGATACAACCTTACAAACCCTGCCACCCAGACCTGAAGTTACTCGCGATGATCA
AAAACTCGACTGGTCAGAGGTTAAAGGTCAGCCTCACGCGAAACATGCCCTGGAAATAGCAGCCTGTGGAGGTCACAGCG
TTTTATTAAGCGGCGCGCCAGGCAGCGGTAAAACCATGCTGGCAAAACGATTTGCCACACTTCTGCCTGATCTTTCGGAA
AATGAAGCGCTGGAATGTGCGGCTATTCACTCTATTCGCGGCAAGTTGCCTAATTTTCAGCAATGGCGAATACCGCCTTT
TCGCTCACCGCATCACACAGCCTCACCTGTTGCTCTTGTCGGAGGTGGTAATCCACCTAAACCCGGCGAAATTTCTCTCG
CTCATTGTGGTGTTTTGTTTCTTGACGAATTACCGGAATTTAATCGCCATGTTCTGGAAACTTTAAGAGAACCTTTGGAA
TCTGGTCATATTTGTATTTCCAGAGCAGCCATACAAATGGAATTTCCAGCTCATTTTCAACTCATTGCCGCAATGAATCC
TTGTCCTTGCGGTCAGTGGGGAAATCCTCAGGCTGACTGCTTGTGCAGTCCCGATCGCATCGGTCGTTATCTTGGTAAAT
TATCCGCACCTTTACTGGATCGTATTGATATGCAAATTCATGTTTATCCCTTGTCAAAAGAAGAACTCATCAAGCCTAAT
GAACAAAAGGAAAATCAAAGTGCTGTCCTTAGAGAAAAAGTGGCAAGCATAAGAAAAACACAATGGTTGCGTCAGGATTG
CCTGAATGCTCATTTAAGTGCTAAAGCTTGCGAACAACTTTGCTCACTTGGATCGCCTGAGCAGCAATTTCTAAGCAAGG
CCATGGACAAACTCAAATTGTCTGCTCGCAGTTATCATCGCTTACTCAAAGTTGCCCGAACCATAGCCGATATGAAGCAA
CAAAACAGCGTGTCAGTTTCTCATCTGCAACAGGCCTTGTCATTTAAACAAGCCCTGCAAGCACCCAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

74.553

100

0.746
  comM Legionella pneumophila strain ERS1305867

74.553

100

0.746
  comM Haemophilus influenzae Rd KW20

50.696

100

0.507
  comM Glaesserella parasuis strain SC1401

50.595

100

0.507
  comM Vibrio cholerae strain A1552

51.21

98.608

0.505
  comM Vibrio campbellii strain DS40M4

50.201

99.006

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.944

98.608

0.423

Multiple sequence alignment