Detailed information
Bioinformatically predicted
Overview
| Name | comFC/cflB | Type | Machinery gene |
| Locus tag | GE024_RS11225 | Genome accession | NZ_CP046521 |
| Coordinates | 1622912..1623334 (-) | Length | 140 a.a. |
| NCBI ID | WP_093999504.1 | Uniprot ID | - |
| Organism | Streptococcus canis strain HL_100 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1617912..1628334
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE024_RS08110 (GE024_08150) | - | 1621281..1622232 (+) | 952 | Protein_1544 | IS30 family transposase | - |
| GE024_RS08115 (GE024_08155) | raiA | 1622284..1622832 (-) | 549 | WP_093999503.1 | ribosome-associated translation inhibitor RaiA | - |
| GE024_RS11225 | comFC/cflB | 1622912..1623334 (-) | 423 | WP_093999504.1 | ComF family protein | Machinery gene |
| GE024_RS08125 (GE024_08165) | comFA/cflA | 1623549..1624874 (-) | 1326 | WP_093999505.1 | DEAD/DEAH box helicase | Machinery gene |
| GE024_RS08130 (GE024_08170) | - | 1624930..1625562 (+) | 633 | WP_093999506.1 | YigZ family protein | - |
| GE024_RS08135 (GE024_08175) | cysK | 1625680..1626615 (+) | 936 | WP_003044700.1 | cysteine synthase A | - |
| GE024_RS08140 (GE024_08180) | tnpA | 1626888..1627352 (-) | 465 | Protein_1550 | IS200/IS605 family transposase | - |
| GE024_RS08145 (GE024_08185) | - | 1627540..1627899 (-) | 360 | WP_093998981.1 | S1 RNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 16406.82 Da Isoelectric Point: 9.8720
>NTDB_id=352644 GE024_RS11225 WP_093999504.1 1622912..1623334(-) (comFC/cflB) [Streptococcus canis strain HL_100]
MKAYFRQYKFQGDYLLRNVFAQELAEIIYQNYQGYVPVPVPISDKRYQERNFNQVSAILEAGKVRYHQIFEKHDDSRQSS
KTKKERLLTKNSYHLLEGVEIPPRILIVDDIYTTGSTIMALKKQLLQFGNSDIKSLSIAR
MKAYFRQYKFQGDYLLRNVFAQELAEIIYQNYQGYVPVPVPISDKRYQERNFNQVSAILEAGKVRYHQIFEKHDDSRQSS
KTKKERLLTKNSYHLLEGVEIPPRILIVDDIYTTGSTIMALKKQLLQFGNSDIKSLSIAR
Nucleotide
Download Length: 423 bp
>NTDB_id=352644 GE024_RS11225 WP_093999504.1 1622912..1623334(-) (comFC/cflB) [Streptococcus canis strain HL_100]
ATGAAAGCCTATTTCAGACAATATAAATTCCAAGGAGACTATTTATTAAGGAATGTCTTTGCTCAGGAATTAGCAGAAAT
CATTTATCAGAACTATCAAGGATATGTCCCTGTCCCAGTACCTATAAGCGACAAACGTTACCAAGAACGGAATTTTAATC
AGGTGAGCGCTATACTTGAGGCTGGTAAAGTTCGTTACCATCAAATTTTTGAAAAACATGATGATAGCCGTCAATCTTCA
AAGACGAAAAAGGAGCGCTTGTTGACTAAAAATTCTTATCATTTACTTGAAGGAGTCGAAATTCCCCCTAGAATCCTCAT
TGTTGATGATATTTATACCACTGGTAGTACCATTATGGCTTTGAAAAAGCAGTTACTACAATTTGGAAATAGTGACATCA
AAAGTTTGTCGATTGCACGTTAA
ATGAAAGCCTATTTCAGACAATATAAATTCCAAGGAGACTATTTATTAAGGAATGTCTTTGCTCAGGAATTAGCAGAAAT
CATTTATCAGAACTATCAAGGATATGTCCCTGTCCCAGTACCTATAAGCGACAAACGTTACCAAGAACGGAATTTTAATC
AGGTGAGCGCTATACTTGAGGCTGGTAAAGTTCGTTACCATCAAATTTTTGAAAAACATGATGATAGCCGTCAATCTTCA
AAGACGAAAAAGGAGCGCTTGTTGACTAAAAATTCTTATCATTTACTTGAAGGAGTCGAAATTCCCCCTAGAATCCTCAT
TGTTGATGATATTTATACCACTGGTAGTACCATTATGGCTTTGAAAAAGCAGTTACTACAATTTGGAAATAGTGACATCA
AAAGTTTGTCGATTGCACGTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC/cflB | Streptococcus mitis SK321 |
45 |
100 |
0.45 |
| comFC/cflB | Streptococcus mitis NCTC 12261 |
45 |
100 |
0.45 |
| comFC/cflB | Streptococcus pneumoniae Rx1 |
45 |
100 |
0.45 |
| comFC/cflB | Streptococcus pneumoniae D39 |
45 |
100 |
0.45 |
| comFC/cflB | Streptococcus pneumoniae R6 |
45 |
100 |
0.45 |
| comFC/cflB | Streptococcus pneumoniae TIGR4 |
45 |
100 |
0.45 |
| comFC | Lactococcus lactis subsp. cremoris KW2 |
43.262 |
100 |
0.436 |