Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GE024_RS10305 Genome accession   NZ_CP046521
Coordinates   2092415..2093011 (-) Length   198 a.a.
NCBI ID   WP_003045733.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2087415..2098011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE024_RS10275 (GE024_10340) - 2087671..2087940 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  GE024_RS10280 (GE024_10345) spx 2088052..2088450 (-) 399 WP_093999148.1 transcriptional regulator Spx -
  GE024_RS10285 (GE024_10350) recA 2088847..2089983 (-) 1137 WP_093999149.1 recombinase RecA Machinery gene
  GE024_RS10290 (GE024_10355) cinA 2090089..2091360 (-) 1272 WP_093999150.1 competence/damage-inducible protein A Machinery gene
  GE024_RS11340 - 2091477..2091635 (-) 159 WP_223824822.1 VOC family protein -
  GE024_RS10300 (GE024_10365) - 2091833..2092405 (-) 573 WP_003045731.1 DNA-3-methyladenine glycosylase I -
  GE024_RS10305 (GE024_10370) ruvA 2092415..2093011 (-) 597 WP_003045733.1 Holliday junction branch migration protein RuvA Machinery gene
  GE024_RS10310 (GE024_10375) - 2092995..2094233 (-) 1239 WP_003045734.1 MFS transporter -
  GE024_RS10315 (GE024_10380) hexB 2094244..2096226 (-) 1983 WP_039994902.1 DNA mismatch repair endonuclease MutL Machinery gene
  GE024_RS11290 - 2096320..2097244 (-) 925 Protein_1986 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21859.21 Da        Isoelectric Point: 6.4933

>NTDB_id=352637 GE024_RS10305 WP_003045733.1 2092415..2093011(-) (ruvA) [Streptococcus canis strain HL_100]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGKTKVNNHTAGNPQLDEAIEAL
LALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=352637 GE024_RS10305 WP_003045733.1 2092415..2093011(-) (ruvA) [Streptococcus canis strain HL_100]
ATGTACGATTATATTAAAGGTCAGTTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTAGGCTATAT
TATTAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTATCTGCATCAAGTTATTCGTG
AGGATGCTCACTTGTTGTTTGGCTTTCACACAGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTCTCAGGTATT
GGTCCAACAACAGCCTTAGCTATCGTTGCGGTTGATGATAATCAGGGACTTGTTAATGCCATTGATAACAGTGACATTAA
ATACTTGATGAAATTTCCTAAGATTGGTAAAAAAACAGCTCAGCAAATGGTGCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAAGACCAAAGTGAACAACCATACAGCAGGTAATCCTCAACTAGACGAAGCGATCGAAGCTCTC
CTTGCCCTCGGTTATAAGGCAACAGAATTGAAGAAAATTCGTGCTTTCTTTGAAGGAACTTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.394

100

0.414

Multiple sequence alignment