Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ETW23_RS08680 Genome accession   NZ_CP038234
Coordinates   1748504..1749037 (-) Length   177 a.a.
NCBI ID   WP_129370682.1    Uniprot ID   -
Organism   Leisingera sp. NJS201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1743504..1754037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETW23_RS08665 (ETW23_08665) - 1744443..1745459 (+) 1017 WP_129370678.1 C4-dicarboxylate TRAP transporter substrate-binding protein -
  ETW23_RS08670 (ETW23_08670) - 1745542..1746192 (+) 651 WP_129370679.1 TRAP transporter small permease subunit -
  ETW23_RS08675 (ETW23_08675) - 1746198..1747601 (+) 1404 WP_129370680.1 TRAP transporter large permease -
  ETW23_RS25870 - 1747704..1748093 (-) 390 Protein_1747 hypothetical protein -
  ETW23_RS08680 (ETW23_08680) ssb 1748504..1749037 (-) 534 WP_129370682.1 single-stranded DNA-binding protein Machinery gene
  ETW23_RS08685 (ETW23_08685) - 1749271..1749855 (+) 585 WP_129370683.1 lytic transglycosylase domain-containing protein -
  ETW23_RS08690 (ETW23_08690) - 1749973..1750347 (+) 375 WP_134829762.1 hypothetical protein -
  ETW23_RS08695 (ETW23_08695) - 1750560..1751132 (+) 573 WP_167738103.1 hypothetical protein -
  ETW23_RS08700 (ETW23_08700) - 1751252..1751992 (+) 741 WP_167738104.1 sulfotransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18457.98 Da        Isoelectric Point: 5.2733

>NTDB_id=352471 ETW23_RS08680 WP_129370682.1 1748504..1749037(-) (ssb) [Leisingera sp. NJS201]
MAGSLNKVMLIGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEIVLQGFGSTLTMLDGRGEGGGGQDGGGGGGYGGGSQGGGYGGGYDSGQQGGGSGGGGGG
NFGGGASHNIDDDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=352471 ETW23_RS08680 WP_129370682.1 1748504..1749037(-) (ssb) [Leisingera sp. NJS201]
ATGGCCGGCTCTCTTAACAAAGTCATGCTCATCGGCAATCTGGGCCGCGACCCGGAGGTGCGCAGCTTCCAGAACGGCGG
TAAAGTTTGCAACCTGCGCATTGCTACCTCGGAAAACTGGAAAGACCGTAACACCGGTGAACGCCGCGAGCGGACTGAGT
GGCACTCTGTGGCCATTTTCAGCGAAGGTCTTGTGCGCGTTGCCGAGCAGTATCTGCGCAAAGGCTCCAAGGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAAAGCGGTCAGGACCGGTATTCGACCGAAATCGTCCTGCAAGGCTT
CGGCTCCACCCTGACCATGCTTGACGGCCGCGGTGAAGGCGGCGGCGGCCAAGACGGTGGCGGCGGCGGCGGTTATGGCG
GCGGCAGCCAGGGCGGCGGTTACGGCGGCGGTTATGACAGCGGCCAGCAAGGCGGCGGCAGCGGTGGTGGCGGCGGCGGC
AATTTCGGCGGCGGCGCGTCCCATAACATCGACGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.52
  ssb Vibrio cholerae strain A1552

49.432

99.435

0.492
  ssb Neisseria gonorrhoeae MS11

41.667

100

0.424
  ssb Neisseria meningitidis MC58

41.667

100

0.424

Multiple sequence alignment