Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   E3T45_RS06605 Genome accession   NZ_CP038170
Coordinates   1305350..1305835 (-) Length   161 a.a.
NCBI ID   WP_002346391.1    Uniprot ID   -
Organism   Enterococcus faecium strain SDGJP3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1300350..1310835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T45_RS06560 (E3T45_06850) - 1300804..1302102 (-) 1299 WP_033612330.1 PBSX family phage terminase large subunit -
  E3T45_RS06565 (E3T45_06855) - 1302095..1302550 (-) 456 WP_002311445.1 terminase small subunit -
  E3T45_RS06570 (E3T45_06860) - 1302576..1302800 (-) 225 WP_010725231.1 hypothetical protein -
  E3T45_RS06575 (E3T45_06865) - 1303285..1303701 (-) 417 WP_002318885.1 ArpU family phage packaging/lysis transcriptional regulator -
  E3T45_RS06580 (E3T45_06870) - 1303777..1304073 (-) 297 WP_283651811.1 hypothetical protein -
  E3T45_RS06585 (E3T45_06875) - 1304070..1304375 (-) 306 WP_283651812.1 MazG-like family protein -
  E3T45_RS06590 (E3T45_06880) - 1304552..1304866 (-) 315 WP_283651813.1 DUF1140 family protein -
  E3T45_RS06595 (E3T45_06885) - 1304866..1305171 (-) 306 WP_033613738.1 hypothetical protein -
  E3T45_RS06600 (E3T45_06890) - 1305168..1305329 (-) 162 WP_025481210.1 hypothetical protein -
  E3T45_RS06605 (E3T45_06895) ssbA 1305350..1305835 (-) 486 WP_002346391.1 single-stranded DNA-binding protein Machinery gene
  E3T45_RS06610 (E3T45_06900) - 1305836..1306171 (-) 336 WP_002346392.1 VRR-NUC domain-containing protein -
  E3T45_RS06615 (E3T45_06905) - 1306168..1306356 (-) 189 WP_002346393.1 hypothetical protein -
  E3T45_RS06620 (E3T45_06910) - 1306357..1307565 (-) 1209 WP_229059929.1 DnaB-like helicase C-terminal domain-containing protein -
  E3T45_RS06625 - 1307585..1308280 (-) 696 WP_010723228.1 helix-turn-helix domain-containing protein -
  E3T45_RS06630 (E3T45_06920) - 1308284..1308970 (-) 687 WP_269002059.1 putative HNHc nuclease -
  E3T45_RS06635 (E3T45_06925) - 1308976..1309647 (-) 672 WP_002340820.1 DUF1071 domain-containing protein -
  E3T45_RS06640 (E3T45_06930) - 1309640..1309981 (-) 342 WP_010722188.1 hypothetical protein -
  E3T45_RS06645 - 1310041..1310169 (-) 129 WP_010721846.1 hypothetical protein -
  E3T45_RS06650 (E3T45_06935) - 1310308..1310496 (-) 189 WP_002301530.1 hypothetical protein -
  E3T45_RS06655 (E3T45_06940) - 1310517..1310801 (-) 285 WP_010722867.1 hypothetical protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17839.61 Da        Isoelectric Point: 7.9972

>NTDB_id=351994 E3T45_RS06605 WP_002346391.1 1305350..1305835(-) (ssbA) [Enterococcus faecium strain SDGJP3]
MINTVTLVGRLTKDPELRTTTSGTGVATFTLAVNRDFKDANGNREADFINCVAWRKTAEILANYAKKGSLIGLIGRIQTR
SYENQQGNRVFVTEVVVERFNLLESRSNNDTSVSNNQTTNYKGNNQNSSNDLSHAQNNQSKNVNSNPFDGSSMNTDLELP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=351994 E3T45_RS06605 WP_002346391.1 1305350..1305835(-) (ssbA) [Enterococcus faecium strain SDGJP3]
ATGATTAATACAGTGACTTTAGTAGGAAGATTGACAAAAGACCCAGAGCTTAGAACCACAACAAGTGGAACAGGAGTAGC
GACTTTCACATTAGCAGTAAATCGTGACTTCAAAGATGCGAATGGAAATAGAGAAGCAGACTTTATCAATTGTGTAGCGT
GGAGAAAAACAGCTGAAATTTTAGCAAACTATGCGAAAAAAGGTTCGTTGATTGGATTGATTGGGCGTATTCAAACCAGA
AGCTATGAAAATCAACAAGGAAACCGAGTTTTTGTGACGGAAGTAGTCGTAGAACGCTTCAATCTACTTGAGAGCCGTTC
TAACAACGATACAAGCGTTTCGAACAATCAGACGACAAATTATAAAGGGAACAACCAAAACAGCTCTAACGACTTATCAC
ACGCTCAAAACAATCAATCAAAAAACGTTAATTCCAATCCGTTTGATGGTTCGTCAATGAATACTGATTTAGAACTTCCG
TTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.581

100

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.54
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

65.839

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.206

66.46

0.36
  ssbB/cilA Streptococcus mitis NCTC 12261

54.206

66.46

0.36

Multiple sequence alignment