Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | EXH44_RS01980 | Genome accession | NZ_CP038145 |
| Coordinates | 424104..425300 (+) | Length | 398 a.a. |
| NCBI ID | WP_162856044.1 | Uniprot ID | A0A4P7CHW0 |
| Organism | Actinobacillus indolicus strain AIFJ1607 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 419104..430300
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXH44_RS01965 (EXH44_01980) | radA | 420650..422026 (-) | 1377 | WP_162856042.1 | DNA repair protein RadA | - |
| EXH44_RS01970 (EXH44_01985) | pilA | 422214..422678 (+) | 465 | WP_071610760.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| EXH44_RS01975 (EXH44_01990) | pilB | 422726..424111 (+) | 1386 | WP_162856043.1 | GspE/PulE family protein | Machinery gene |
| EXH44_RS01980 (EXH44_01995) | pilC | 424104..425300 (+) | 1197 | WP_162856044.1 | type II secretion system F family protein | Machinery gene |
| EXH44_RS01985 (EXH44_02000) | - | 425297..425965 (+) | 669 | WP_162856045.1 | prepilin peptidase | - |
| EXH44_RS01990 (EXH44_02005) | coaE | 426063..426689 (+) | 627 | WP_162856046.1 | dephospho-CoA kinase | - |
| EXH44_RS01995 (EXH44_02010) | yacG | 426686..426865 (+) | 180 | WP_162856047.1 | DNA gyrase inhibitor YacG | - |
| EXH44_RS02000 (EXH44_02015) | lpxA | 426916..427710 (-) | 795 | WP_162856048.1 | acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase | - |
| EXH44_RS02005 (EXH44_02020) | fabZ | 427739..428146 (-) | 408 | WP_244238750.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| EXH44_RS02010 (EXH44_02025) | lpxD | 428229..429254 (-) | 1026 | WP_162856050.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| EXH44_RS02015 (EXH44_02030) | - | 429254..430096 (-) | 843 | WP_162856051.1 | OmpH family outer membrane protein | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 45572.25 Da Isoelectric Point: 9.9647
>NTDB_id=351750 EXH44_RS01980 WP_162856044.1 424104..425300(+) (pilC) [Actinobacillus indolicus strain AIFJ1607]
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKHLQQKGYSQLRISRHFALPTAPKKEEINQFMQQFALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCALCFLLIHILNKKTDL
IQRLKLIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGHRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE
MNNIYEFQWKGRNRFGQKQTGRQLAESREVLEKHLQQKGYSQLRISRHFALPTAPKKEEINQFMQQFALLIQAKIPLKQS
LVMLLETCQNRTFYRWQQETIRLIEAGFALSVAFEKQGKYINPQEIQLIKMAETSGNLGLILTNIAQRREKSEKLAKKIK
KILFYPVFILAISITLSILLLLFIVPQFAELYGSKGKSLPLITEILFSLSHFLQHSILTLIILCALCFLLIHILNKKTDL
IQRLKLIILSHIPILKGIIQYSRIIFFCQNSSLMLASHIRLDTVLHSFLANKSDDILLQGSLATTLTYLKQGHRLADSLD
PKLFPTDMLQMIAIGEQSGKLSPMLQQISDGYQQRLDYQIDILSQLLEPMLMVLMGIIVGTILVGLYLPIFDMGAMIE
Nucleotide
Download Length: 1197 bp
>NTDB_id=351750 EXH44_RS01980 WP_162856044.1 424104..425300(+) (pilC) [Actinobacillus indolicus strain AIFJ1607]
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACACTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAGGAAATTAATCAATTTATGCAACAGTTTGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCCTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGATCAAAAGGAAAATCATTACCCCTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATCTTATGTGCGTTATGTTTTCTTTTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTCAACGCTTAAAATTGATTATCTTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGCCATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA
ATGAATAACATTTATGAATTTCAATGGAAAGGACGCAACCGCTTTGGACAAAAGCAAACAGGGCGACAGCTTGCCGAAAG
CCGAGAAGTGCTAGAAAAACACTTGCAACAAAAAGGCTATAGCCAGTTACGCATTAGCCGACATTTTGCCTTGCCGACGG
CACCGAAAAAGGAGGAAATTAATCAATTTATGCAACAGTTTGCATTATTAATTCAAGCCAAAATCCCCCTAAAACAGAGT
TTGGTAATGTTGCTGGAAACTTGCCAAAATCGCACCTTTTACCGTTGGCAACAAGAGACAATCCGCTTGATTGAAGCTGG
CTTTGCCCTATCCGTTGCCTTTGAAAAACAGGGGAAATATATCAATCCACAAGAGATCCAATTAATTAAAATGGCAGAAA
CAAGCGGTAATTTAGGGCTGATTTTAACCAATATTGCACAACGCCGTGAAAAATCGGAAAAATTAGCCAAGAAAATTAAA
AAAATTCTCTTTTATCCCGTCTTTATTTTAGCTATTTCAATCACACTCTCTATTTTATTATTACTTTTTATTGTGCCACA
ATTTGCAGAACTTTATGGATCAAAAGGAAAATCATTACCCCTAATTACCGAAATACTCTTTAGCCTATCTCATTTTCTAC
AACACTCTATTTTAACGCTAATTATCTTATGTGCGTTATGTTTTCTTTTAATTCATATTTTAAATAAAAAAACAGATCTT
ATTCAACGCTTAAAATTGATTATCTTAAGCCATATTCCTATTTTAAAAGGCATTATCCAGTATTCACGCATTATCTTTTT
TTGTCAAAATAGCAGTTTAATGCTGGCTTCACATATTCGTTTAGATACTGTACTTCATTCCTTTTTAGCCAATAAAAGTG
ATGATATTTTATTACAAGGTTCTCTAGCAACTACACTAACTTATTTAAAACAAGGCCATCGTTTAGCCGACAGTTTAGAT
CCAAAACTCTTTCCTACGGATATGTTACAGATGATTGCCATTGGCGAGCAGAGCGGAAAATTATCGCCAATGTTGCAACA
AATCAGCGACGGTTATCAACAGCGGTTAGATTATCAAATTGATATACTTTCCCAATTATTAGAGCCGATGTTAATGGTGT
TAATGGGAATTATTGTAGGAACTATTTTAGTCGGGTTATATTTGCCGATTTTTGATATGGGAGCAATGATAGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
97.99 |
100 |
0.98 |
| pilC | Haemophilus influenzae 86-028NP |
37.905 |
100 |
0.382 |
| pilC | Haemophilus influenzae Rd KW20 |
37.905 |
100 |
0.382 |