Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E3U44_RS07965 Genome accession   NZ_CP038033
Coordinates   1628116..1629633 (+) Length   505 a.a.
NCBI ID   WP_134357649.1    Uniprot ID   A0A4P7BYW6
Organism   Nitrosococcus wardiae strain D1FHS     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1623116..1634633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U44_RS07945 (E3U44_07945) - 1623505..1624383 (-) 879 WP_134357645.1 DUF6733 family protein -
  E3U44_RS07950 (E3U44_07950) - 1624782..1625075 (+) 294 WP_134357646.1 hypothetical protein -
  E3U44_RS07955 (E3U44_07955) - 1626287..1627042 (-) 756 WP_134357647.1 carbonic anhydrase -
  E3U44_RS07960 (E3U44_07960) ubiK 1627627..1627950 (+) 324 WP_134357648.1 ubiquinone biosynthesis accessory factor UbiK -
  E3U44_RS07965 (E3U44_07965) comM 1628116..1629633 (+) 1518 WP_134357649.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E3U44_RS07970 (E3U44_07970) - 1629620..1631623 (+) 2004 WP_134357650.1 UvrD-helicase domain-containing protein -
  E3U44_RS07975 (E3U44_07975) ilvD 1631926..1633788 (+) 1863 WP_134357651.1 dihydroxy-acid dehydratase -
  E3U44_RS07980 (E3U44_07980) - 1633814..1634470 (-) 657 WP_240761812.1 TIGR04211 family SH3 domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 54736.02 Da        Isoelectric Point: 8.4940

>NTDB_id=351656 E3U44_RS07965 WP_134357649.1 1628116..1629633(+) (comM) [Nitrosococcus wardiae strain D1FHS]
MSLAIAYSRAQAGVDASLVTVEVHLSNGLPAFSIVGLPETAVKESKDRVRGALLNCHFEFPARRITVNLAPADLPKEGGR
FDLAIALGILAASGQISPPVLKAYEFVGELALSGEVRGIRGVLPVALQAAKAGHTLVVAEENAPEAALVSTVEVLGASHL
LAVCQHLRGESLLAPFSGNSLKTVPVEEMDIADVRGQYHVKRALEVAAAGAHNLLMIGPPGTGKTMLASRLPGLLPGMSE
AEALESATVQSISSRGFDFSRWRQRPFRAPHHTASAVALVGGGGQPRPGEISLAHHGVLFLDELPEFERRVLEVLREPLE
AGRIMISRAAQQVEFPACVQLVAAMNPCPCGYLGDPKGRCRCTMEQVQRYRARISGPLLDRIDMQIEVPPVPLKQLRTEP
EGIVETSRQIQARVEAARRRQLTRSGQPNSWLSNREIERTCRLSDKDYRLLDQALEQLGLSARAYHRILKVARTIADLEG
SEAIRTPHLSEAIGYRRLDRSHGKP

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=351656 E3U44_RS07965 WP_134357649.1 1628116..1629633(+) (comM) [Nitrosococcus wardiae strain D1FHS]
ATGTCGCTGGCGATTGCCTACAGTCGGGCTCAGGCAGGAGTTGATGCTTCCTTAGTGACCGTGGAGGTCCACCTCTCAAA
TGGTCTCCCTGCTTTTTCAATTGTGGGCCTGCCGGAAACTGCGGTTAAGGAAAGCAAAGACCGGGTACGCGGTGCATTGC
TTAATTGTCATTTTGAGTTTCCAGCTCGTCGTATTACGGTAAACTTGGCGCCTGCAGATTTGCCCAAGGAAGGAGGGCGC
TTTGATTTGGCTATCGCCTTAGGCATTTTAGCTGCCTCAGGGCAGATCTCACCACCGGTGTTAAAGGCCTATGAATTTGT
CGGCGAGCTTGCTTTAAGCGGCGAGGTACGGGGCATTCGTGGAGTGCTGCCCGTCGCCTTGCAAGCAGCAAAAGCGGGGC
ACACCTTAGTTGTTGCAGAAGAAAATGCCCCCGAAGCGGCCCTAGTGTCTACGGTTGAGGTATTAGGGGCTTCCCACCTT
TTAGCAGTCTGTCAGCATCTCCGGGGGGAATCCTTACTTGCCCCCTTTAGCGGAAATTCCCTCAAGACGGTTCCTGTAGA
GGAGATGGATATTGCTGATGTTCGGGGTCAGTATCATGTCAAACGGGCGCTAGAGGTGGCAGCGGCTGGAGCTCATAACC
TCTTAATGATCGGGCCCCCGGGAACGGGCAAGACGATGTTAGCCAGTCGTTTACCAGGCCTTTTGCCTGGAATGAGCGAA
GCCGAAGCGCTAGAAAGTGCCACTGTGCAATCTATCAGCAGCCGAGGCTTTGATTTTAGCCGTTGGCGTCAGCGTCCTTT
CCGAGCACCCCATCATACTGCCTCTGCGGTAGCCTTAGTGGGAGGAGGCGGCCAGCCCCGGCCCGGGGAGATCTCCCTGG
CCCATCACGGGGTATTATTTCTTGATGAGTTGCCAGAATTTGAGCGTCGCGTATTGGAGGTTCTCAGAGAACCTTTGGAA
GCGGGCCGTATTATGATTTCCCGGGCCGCCCAGCAGGTAGAGTTTCCCGCTTGTGTGCAATTAGTCGCGGCCATGAATCC
CTGTCCCTGCGGCTATTTAGGAGATCCCAAGGGGCGTTGCCGGTGTACTATGGAACAAGTACAGCGTTATCGGGCGCGGA
TTTCCGGGCCTTTGTTAGACCGCATCGATATGCAAATCGAGGTACCGCCTGTGCCCCTGAAGCAGTTACGGACCGAACCT
GAAGGAATTGTGGAAACCAGTCGCCAGATTCAAGCTCGGGTGGAAGCGGCGCGAAGGCGCCAATTAACCCGTTCGGGACA
ACCTAACAGTTGGTTAAGCAATCGGGAGATAGAGCGCACTTGCCGCCTTAGTGATAAGGATTACCGTTTACTGGACCAGG
CCTTGGAGCAATTGGGGCTTTCGGCCCGAGCCTACCACCGGATATTGAAGGTAGCCCGGACTATTGCCGATTTGGAAGGA
AGCGAGGCTATCCGTACTCCCCATCTTTCTGAGGCGATTGGTTATCGACGATTAGACCGTTCCCATGGCAAACCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7BYW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

57.594

100

0.578
  comM Vibrio campbellii strain DS40M4

57.03

100

0.57
  comM Vibrio cholerae strain A1552

57.2

99.01

0.566
  comM Glaesserella parasuis strain SC1401

55.865

99.604

0.556
  comM Legionella pneumophila str. Paris

51.089

100

0.511
  comM Legionella pneumophila strain ERS1305867

51.089

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.266

100

0.479

Multiple sequence alignment