Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   E3U39_RS18845 Genome accession   NZ_CP038028
Coordinates   3756246..3756854 (-) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus amyloliquefaciens strain FS1092     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3751246..3761854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3U39_RS18825 (E3U39_18825) dnaD 3751482..3752180 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  E3U39_RS18830 (E3U39_18830) nth 3752199..3752858 (+) 660 WP_053573256.1 endonuclease III -
  E3U39_RS18835 (E3U39_18835) - 3752855..3753346 (+) 492 WP_053573255.1 YpoC family protein -
  E3U39_RS18840 (E3U39_18840) - 3753424..3756207 (-) 2784 WP_015417703.1 PBP1A family penicillin-binding protein -
  E3U39_RS18845 (E3U39_18845) recU 3756246..3756854 (-) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  E3U39_RS18850 (E3U39_18850) - 3756896..3757858 (+) 963 WP_053573254.1 DUF2515 domain-containing protein -
  E3U39_RS18855 (E3U39_18855) sspM 3757902..3758006 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  E3U39_RS18860 (E3U39_18860) - 3758212..3758457 (+) 246 WP_012117836.1 DUF5446 family protein -
  E3U39_RS18865 (E3U39_18865) - 3758503..3758871 (+) 369 WP_053573253.1 YppE family protein -
  E3U39_RS18870 (E3U39_18870) - 3758910..3759092 (-) 183 WP_003153532.1 YppF family protein -
  E3U39_RS18875 (E3U39_18875) - 3759279..3759713 (+) 435 WP_053573252.1 YppG family protein -
  E3U39_RS18880 (E3U39_18880) - 3759743..3760156 (-) 414 WP_053573251.1 Hsp20/alpha crystallin family protein -
  E3U39_RS18885 (E3U39_18885) - 3760295..3760801 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=351628 E3U39_RS18845 WP_012117837.1 3756246..3756854(-) (recU) [Bacillus amyloliquefaciens strain FS1092]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=351628 E3U39_RS18845 WP_012117837.1 3756246..3756854(-) (recU) [Bacillus amyloliquefaciens strain FS1092]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAATATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGTGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891

Multiple sequence alignment