Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E3H47_RS00750 Genome accession   NZ_CP038022
Coordinates   160052..161536 (-) Length   494 a.a.
NCBI ID   WP_005404521.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 155052..166536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS00725 (E3H47_00725) - 155758..156138 (-) 381 WP_005022921.1 membrane protein -
  E3H47_RS00730 (E3H47_00730) - 156247..156645 (+) 399 WP_005022923.1 MAPEG family protein -
  E3H47_RS00735 (E3H47_00735) ppa 156764..157300 (+) 537 WP_005017195.1 inorganic diphosphatase -
  E3H47_RS00740 (E3H47_00740) - 157397..158665 (-) 1269 WP_005022928.1 OprD family outer membrane porin -
  E3H47_RS00745 (E3H47_00745) - 159230..159997 (+) 768 WP_005404520.1 TorF family putative porin -
  E3H47_RS00750 (E3H47_00750) comM 160052..161536 (-) 1485 WP_005404521.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E3H47_RS00755 (E3H47_00755) - 161600..161827 (-) 228 WP_005017183.1 accessory factor UbiK family protein -
  E3H47_RS00760 (E3H47_00760) glnK 162099..162437 (+) 339 WP_005017180.1 P-II family nitrogen regulator -
  E3H47_RS00765 (E3H47_00765) - 162496..163878 (+) 1383 WP_005017177.1 ammonium transporter -
  E3H47_RS00770 (E3H47_00770) nrdR 164000..164452 (+) 453 WP_005017176.1 transcriptional regulator NrdR -
  E3H47_RS00775 (E3H47_00775) ribD 164504..165559 (+) 1056 WP_051005726.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 54272.54 Da        Isoelectric Point: 8.6572

>NTDB_id=351483 E3H47_RS00750 WP_005404521.1 160052..161536(-) (comM) [Acinetobacter radioresistens strain DD78]
MSFAKIYTRGVLGLHAPSIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILVASGQLPEQSTEQIEFIGELALDGCLRPVSGTLAIAMACQKVRHQLILAEANAMEAAQLSDFQVYGAQHL
KQVCQHLLQQQPLLPVKRKLSEAAQDYKLDLADIKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPPNA
QENLEVASIYSIANVQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQMTFPANFQLVAAMNPCPCGYAFNQDNRCQCSADAIKRYQNRISGPLLDRIDLHIDVPPLQAHELQQTTPAE
NSDTVRKRVILAYEQQLQRQSCLNQLLSPKQLELHAQLDQSSLRIIEMAQQRLNLSARAYHRVLRVARTIADLALSKEIQ
TSHLSEALSYRSQS

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=351483 E3H47_RS00750 WP_005404521.1 160052..161536(-) (comM) [Acinetobacter radioresistens strain DD78]
ATGTCTTTTGCCAAAATTTACACCCGGGGGGTGCTGGGGCTACATGCGCCTTCTATTGAAGTTGAAGTTCATGTGAGTCA
GGGGCTTCCCTCCCTGACTATTGTAGGGCTTCCTGAAGCTGCGGTACGTGAAAGTAAAGATCGGGTTCGCTCGGCGATCA
TTAATAGCGGCTTTCAGTTTCCCACCAAACGTCTTACTATTAATCTGGCTCCTGCCGATTTGCCCAAAGATGGATCACGT
CTAGATCTACCGATTGCGTTGGGAATCTTGGTTGCTTCAGGCCAGCTCCCTGAACAAAGTACAGAACAGATTGAATTTAT
TGGTGAACTGGCTTTAGATGGCTGCTTGCGTCCGGTAAGCGGCACACTGGCAATTGCCATGGCATGTCAAAAAGTACGGC
ATCAGCTGATACTGGCAGAAGCAAATGCAATGGAAGCAGCGCAGCTCTCTGACTTTCAGGTCTACGGAGCACAGCACCTA
AAACAGGTTTGCCAGCATTTACTACAGCAACAGCCATTATTACCGGTTAAAAGGAAACTATCTGAAGCTGCTCAAGATTA
TAAACTGGATTTGGCAGATATTAAGGGGCAACTGCGCCCACGGCGTGCTTTGGAAATTGCAGCAGCAGGCGGTCACTCTC
TACTTTTTAAGGGCCCTCCTGGAACTGGAAAGACCCTGCTGGCTTCAAGGTTACCCAGCATTTTACCTCCGCCCAATGCC
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATGTTCAGCATCCCTTTGGACAACGGCCTTTTCGGGCTCC
ACACCATACTGCATCTGCTATTGCGCTGGTCGGCGGCGGCTCGCAACCCAAGCCTGGTGAAATTACTCTGGCACATTTAG
GTGTTTTATTTCTAGATGAGCTTCCTGAATTTGACCGCAAAGTACTGGAAGTTTTACGTCAGCCACTCGAGTCTAAGGAA
ATTGTTATTTCTCGGGCTTCCCGGCAAATGACTTTTCCGGCCAACTTCCAGTTGGTAGCAGCTATGAATCCTTGTCCATG
TGGTTATGCATTTAATCAGGATAACCGTTGCCAGTGTTCAGCCGATGCAATCAAGCGCTATCAGAACCGTATTTCCGGTC
CATTGCTGGACAGGATTGACCTGCATATTGATGTGCCACCCTTGCAGGCGCATGAACTCCAGCAAACCACACCTGCTGAG
AACTCAGACACAGTCAGGAAACGTGTCATTTTAGCTTATGAACAGCAGCTCCAACGCCAGAGTTGCCTTAACCAGCTGCT
TTCCCCTAAACAGCTCGAACTGCATGCACAGCTGGACCAAAGCTCACTACGTATAATTGAAATGGCACAGCAACGACTCA
ATCTCTCTGCCCGTGCTTATCATCGGGTTTTACGTGTAGCCAGAACAATTGCTGATCTGGCACTTTCCAAAGAAATCCAG
ACAAGTCATTTAAGTGAAGCGCTTTCTTACCGCAGTCAGTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.2

100

0.528
  comM Vibrio campbellii strain DS40M4

51.4

100

0.52
  comM Glaesserella parasuis strain SC1401

50.996

100

0.518
  comM Vibrio cholerae strain A1552

51.21

100

0.514
  comM Legionella pneumophila str. Paris

50.403

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.403

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.478

Multiple sequence alignment