Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CAP2UW1_RS03750 Genome accession   NC_013194
Coordinates   869968..871467 (+) Length   499 a.a.
NCBI ID   WP_015765341.1    Uniprot ID   A0A9D8PTX4
Organism   Candidatus Accumulibacter phosphatis     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 864968..876467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAP2UW1_RS03730 (CAP2UW1_0744) - 866490..867977 (-) 1488 WP_015765337.1 ammonium transporter -
  CAP2UW1_RS03735 (CAP2UW1_0745) glnK 867988..868326 (-) 339 WP_015765338.1 P-II family nitrogen regulator -
  CAP2UW1_RS03740 (CAP2UW1_0746) - 868382..869260 (-) 879 WP_015765339.1 TorF family putative porin -
  CAP2UW1_RS03745 (CAP2UW1_0747) - 869502..869747 (+) 246 WP_015765340.1 accessory factor UbiK family protein -
  CAP2UW1_RS03750 (CAP2UW1_0748) comM 869968..871467 (+) 1500 WP_015765341.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CAP2UW1_RS03755 (CAP2UW1_0749) - 871469..872752 (+) 1284 WP_015765342.1 multidrug effflux MFS transporter -
  CAP2UW1_RS03760 (CAP2UW1_0750) - 872670..873956 (-) 1287 WP_015765343.1 MFS transporter -
  CAP2UW1_RS03765 (CAP2UW1_0751) bamE 874181..874669 (+) 489 WP_015765344.1 outer membrane protein assembly factor BamE -
  CAP2UW1_RS03770 (CAP2UW1_0752) speD 874806..875216 (+) 411 WP_015765345.1 adenosylmethionine decarboxylase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53149.81 Da        Isoelectric Point: 7.9751

>NTDB_id=35145 CAP2UW1_RS03750 WP_015765341.1 869968..871467(+) (comM) [Candidatus Accumulibacter phosphatis]
MPLAIVHSRGLDGLFAPEVAVEVHLAGGLPSVTLVGLPDTEVKEARDRVRAALQNSGFDFPSKRITVNLAPADLPKESGR
FDLPIALGILAASGQIPTSALAGYEFAGELSLSGELRPIRGALAMVLAAGSRGRSFVLPSSSAREAALAGTVRVLTADNL
LEVCAHLIGQGQLSECLAVVELADEDADYPDLADVRGQVQAKRALEIAAAGGHSILLVGPPGTGKSMLASRLPGLLPPMT
EAAALESAAVLSLAGQFRPDRFRRHPYRAPHHTASSAALVGGGSIPSPGEISLAHQGVLFLDEIPEFDRRVLEALREPLD
SGRIHISRAARQAEFPAQFQLVAAMNPCPCGYHGDSRGRCRCTPDQVLRYRRRLSGPLLDRIDLQIEVPALPAEVLQQAP
DGEASASVRARVAQARERQIRRQGKANARLTAKEIDQYCQPAAAAAALLKHAISRFELSARAFHRLLKVARTISDLAGSD
TIEAQHVAEAVQYRRFAKD

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=35145 CAP2UW1_RS03750 WP_015765341.1 869968..871467(+) (comM) [Candidatus Accumulibacter phosphatis]
ATGCCGCTCGCCATTGTTCACAGTCGTGGTCTGGATGGACTCTTCGCTCCGGAGGTGGCTGTCGAGGTGCATCTGGCTGG
CGGTCTGCCGAGTGTCACGCTGGTCGGGCTACCCGATACCGAAGTCAAGGAAGCGCGCGATCGGGTCAGGGCGGCGCTGC
AGAACTCGGGTTTCGACTTCCCGAGCAAGCGCATCACGGTCAACCTCGCGCCGGCCGACCTGCCGAAGGAGTCCGGTCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCTTCGGGCCAGATCCCGACGTCGGCACTCGCCGGCTACGAGTTCGC
TGGTGAGCTGTCGCTCTCGGGGGAACTGCGGCCGATTCGCGGCGCGCTCGCCATGGTTCTCGCCGCCGGCAGCCGCGGGC
GCAGCTTTGTCCTGCCGTCAAGCAGCGCCCGCGAGGCCGCCCTGGCCGGGACGGTGCGGGTGCTCACGGCTGACAACCTG
CTCGAGGTCTGCGCACATCTGATCGGGCAGGGCCAACTCAGCGAATGCCTGGCCGTCGTCGAGCTTGCCGACGAGGACGC
GGACTATCCCGATCTCGCCGACGTGCGGGGTCAGGTGCAGGCCAAGCGCGCACTCGAGATCGCCGCCGCGGGTGGGCATT
CGATCCTCCTCGTCGGCCCGCCGGGTACCGGCAAGTCCATGCTCGCCAGCCGGCTGCCCGGCTTGCTGCCGCCGATGACC
GAGGCGGCGGCGCTCGAATCGGCGGCCGTGCTGTCCCTGGCCGGGCAGTTCCGGCCCGATCGCTTTCGCCGCCATCCCTA
CCGGGCGCCGCACCATACGGCGTCGTCGGCGGCGCTGGTCGGCGGCGGCAGCATCCCGAGCCCGGGCGAGATCTCGCTCG
CCCATCAGGGTGTTCTTTTCCTCGACGAGATTCCCGAGTTCGACCGCCGCGTACTGGAAGCACTGCGCGAGCCGTTGGAC
TCAGGGCGCATTCACATTTCGCGCGCCGCGCGTCAGGCCGAGTTTCCGGCCCAGTTCCAGCTCGTCGCGGCGATGAACCC
CTGTCCTTGCGGTTATCACGGCGATTCGCGCGGCCGTTGCCGGTGTACGCCGGATCAGGTGCTGCGTTATCGTCGCCGGC
TCTCCGGCCCACTGCTCGACCGTATCGACCTGCAGATCGAAGTCCCGGCGCTGCCCGCCGAAGTCTTGCAGCAGGCGCCC
GATGGCGAAGCCTCGGCGAGCGTTCGCGCGCGTGTTGCGCAAGCCCGGGAGAGGCAGATCAGACGACAGGGGAAAGCCAA
TGCGCGGCTGACGGCGAAGGAGATTGACCAGTACTGTCAGCCCGCGGCGGCAGCGGCGGCGCTGCTGAAACACGCGATCA
GCCGCTTCGAGCTATCGGCGCGAGCTTTCCACCGCCTGCTCAAGGTGGCGCGGACAATTTCCGATCTGGCCGGGAGCGAC
ACCATCGAGGCGCAGCACGTGGCTGAAGCCGTGCAGTACCGCCGCTTCGCGAAGGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.056

99.399

0.567
  comM Vibrio campbellii strain DS40M4

55.847

99.399

0.555
  comM Haemophilus influenzae Rd KW20

53.507

100

0.535
  comM Glaesserella parasuis strain SC1401

53.307

100

0.533
  comM Legionella pneumophila str. Paris

51.2

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.2

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.168

100

0.459

Multiple sequence alignment