Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E3E15_RS00765 Genome accession   NZ_CP038017
Coordinates   177491..179002 (+) Length   503 a.a.
NCBI ID   WP_172106231.1    Uniprot ID   A0A6M3HS45
Organism   Allofrancisella frigidaquae strain SYSU 10HL1970     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 172491..184002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3E15_RS00745 (E3E15_00740) - 172866..174455 (+) 1590 WP_172106228.1 NADH-quinone oxidoreductase subunit M -
  E3E15_RS00750 (E3E15_00745) - 174465..175913 (+) 1449 WP_172106229.1 NADH-quinone oxidoreductase subunit N -
  E3E15_RS00755 (E3E15_00750) - 176107..177231 (+) 1125 WP_172106230.1 hypothetical protein -
  E3E15_RS00760 (E3E15_00755) - 177294..177488 (+) 195 WP_035720827.1 accessory factor UbiK family protein -
  E3E15_RS00765 (E3E15_00760) comM 177491..179002 (+) 1512 WP_172106231.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E3E15_RS00770 (E3E15_00765) hemE 179063..180100 (+) 1038 WP_172106232.1 uroporphyrinogen decarboxylase -
  E3E15_RS00780 (E3E15_00775) rimP 180300..180749 (+) 450 WP_172106233.1 ribosome maturation factor RimP -
  E3E15_RS00785 (E3E15_00780) nusA 180767..182236 (+) 1470 WP_035720838.1 transcription termination factor NusA -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55104.54 Da        Isoelectric Point: 8.4405

>NTDB_id=351338 E3E15_RS00765 WP_172106231.1 177491..179002(+) (comM) [Allofrancisella frigidaquae strain SYSU 10HL1970]
MSLAVLKSRAQLGIEAPSVSIEVHLSNGLPSLSIVGLPETAVKESKDRVRSAIINSGFNFPNKRITINLAPADLPKSSGR
FDLPIALGILYASGQIDVSKNVEDFEFAGELSLSGELRRISSAIPMAIKCVHATKKLILPVQNEKEIGLVEGVEAYSFVN
LKEVVDFLSGEINKSKVKPNLDIDFDSLYQDLEDVKGQYQAKRALEIAAAGGHNILLVGPPGTGKTMLASRLNSILPPLD
KQEALSSAMIASIKGESHIAESFYKRPFRHPHHTSSGVSLVGGGSNPMPGEISLAHNGVLFLDELPEFDRKVLEVLREPL
ETGVVNISRARCQVEYPANFQLIAAMNPCPCGYLGSQTKECTDSIQTIRRYQSKLSGPLLDRIDLHLEVLELSKQDLTNQ
NLKGEKSSLVRARVEKARQLQISRQNKINALLSSKELDKVCSLGEDSKKMLELAIEKLGLSARGYYKILKVARTIADLNG
NDEVDKKAIQEAISYRKMDKFIK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=351338 E3E15_RS00765 WP_172106231.1 177491..179002(+) (comM) [Allofrancisella frigidaquae strain SYSU 10HL1970]
ATGTCTTTAGCGGTACTAAAAAGTAGAGCTCAGCTTGGTATAGAGGCTCCTTCAGTTTCTATAGAAGTTCATTTATCAAA
TGGTTTGCCAAGCCTGTCAATCGTTGGATTACCAGAAACTGCTGTTAAAGAAAGTAAAGATAGAGTTCGTAGTGCTATTA
TAAACTCAGGTTTTAACTTTCCTAATAAGCGAATTACTATTAATCTAGCTCCTGCTGATTTACCTAAAAGTAGTGGTAGA
TTTGATTTACCGATAGCTTTAGGAATACTTTACGCATCAGGTCAAATAGATGTTAGTAAGAACGTTGAAGATTTTGAATT
TGCTGGAGAGTTATCTTTAAGTGGTGAGCTTAGAAGAATATCTAGTGCTATACCGATGGCTATTAAGTGTGTGCATGCTA
CTAAAAAACTTATTTTACCTGTTCAGAATGAAAAAGAAATAGGTTTAGTTGAAGGCGTTGAAGCTTATAGTTTTGTTAAC
TTAAAAGAGGTTGTGGATTTTTTATCAGGTGAAATTAACAAGTCAAAAGTAAAGCCCAATCTAGATATTGACTTTGATAG
TCTTTATCAAGACTTGGAGGACGTAAAAGGTCAATATCAGGCGAAAAGAGCTTTAGAAATAGCTGCAGCTGGTGGACACA
ATATTCTTTTAGTAGGACCACCTGGAACGGGTAAAACAATGTTAGCTAGTAGACTAAACTCAATTTTACCACCATTGGAT
AAACAAGAAGCTCTTTCATCAGCAATGATAGCTTCAATAAAAGGAGAGTCTCATATAGCAGAGAGTTTTTATAAAAGACC
TTTTAGACACCCTCACCATACATCTTCAGGAGTATCTTTAGTTGGCGGTGGTAGTAACCCTATGCCAGGAGAAATTTCTT
TAGCTCATAATGGGGTATTGTTTTTGGATGAGTTACCTGAGTTTGACCGTAAAGTTTTAGAAGTATTGCGGGAGCCTTTA
GAAACAGGAGTTGTGAATATTTCTCGTGCTAGATGTCAAGTAGAGTATCCAGCAAACTTCCAACTAATTGCTGCGATGAA
TCCTTGTCCCTGTGGATATTTAGGGTCTCAAACTAAAGAATGTACAGACTCTATACAAACAATACGTAGGTATCAAAGTA
AGTTATCGGGTCCTTTGCTGGACAGGATAGATTTACATCTGGAAGTTTTAGAATTGTCTAAACAAGACCTTACCAACCAA
AATCTTAAGGGTGAAAAAAGTAGCTTAGTTAGAGCTAGAGTTGAAAAGGCACGACAGTTGCAAATATCACGTCAGAATAA
AATTAATGCGTTGCTAAGTAGTAAAGAGCTTGATAAAGTTTGTTCGCTTGGTGAGGATAGTAAAAAAATGCTTGAATTAG
CAATAGAAAAGCTGGGGTTATCAGCAAGAGGATATTATAAGATACTTAAAGTAGCTAGGACTATAGCTGACCTTAATGGT
AATGATGAGGTTGATAAAAAAGCAATTCAAGAAGCTATAAGTTACAGGAAAATGGATAAGTTTATTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M3HS45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.673

100

0.529
  comM Glaesserella parasuis strain SC1401

51.772

100

0.523
  comM Vibrio campbellii strain DS40M4

52.079

100

0.523
  comM Legionella pneumophila str. Paris

52.008

99.006

0.515
  comM Legionella pneumophila strain ERS1305867

52.008

99.006

0.515
  comM Haemophilus influenzae Rd KW20

50.394

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.996

99.006

0.485

Multiple sequence alignment