Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   E2636_RS01740 Genome accession   NZ_CP038015
Coordinates   342000..342950 (+) Length   316 a.a.
NCBI ID   WP_134208439.1    Uniprot ID   -
Organism   Paenisporosarcina antarctica strain CGMCC 1.6503     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337000..347950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2636_RS01730 (E2636_01730) - 338370..339857 (+) 1488 WP_134208435.1 peptide MFS transporter -
  E2636_RS01735 (E2636_01735) - 340952..341809 (+) 858 WP_134208437.1 DUF6612 family protein -
  E2636_RS01740 (E2636_01740) ceuB 342000..342950 (+) 951 WP_134208439.1 ABC transporter permease Machinery gene
  E2636_RS01745 (E2636_01745) - 342943..343899 (+) 957 WP_134208441.1 iron chelate uptake ABC transporter family permease subunit -
  E2636_RS01750 (E2636_01750) - 343896..344675 (+) 780 WP_134208443.1 ABC transporter ATP-binding protein -
  E2636_RS01755 (E2636_01755) - 344677..345621 (+) 945 WP_134208445.1 siderophore ABC transporter substrate-binding protein -
  E2636_RS01760 (E2636_01760) - 345687..346031 (-) 345 WP_017382082.1 general stress protein -
  E2636_RS01765 (E2636_01765) - 346207..346827 (+) 621 WP_134208447.1 phosphatase PAP2 family protein -
  E2636_RS01770 (E2636_01770) zupT 347133..347942 (+) 810 WP_134208449.1 zinc transporter ZupT -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34659.00 Da        Isoelectric Point: 10.1175

>NTDB_id=351301 E2636_RS01740 WP_134208439.1 342000..342950(+) (ceuB) [Paenisporosarcina antarctica strain CGMCC 1.6503]
MKKTILIVALVILSIGSLFVGVSSITPADLIDFKSEETQIFLISRLPRLVAILLAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILVSMLLFTNASMLEKMTVAFVFALAGTFLFMQILNRIKFKDAIFIPLVGMMFGNILSSIATFFAYRADVI
QNMSAWLQGDFSMMMKGRYELLYISIPVLIVAYLFANRFTVAGMGEDFSVNLGLHYKRIVNLGLILVALITVTVVLTVGV
IPFLGLIIPNIVSIFKGDHLEKTLPHTALLGALFLLVCDILGRIIIFPYEIPISLMVGVIGSGIFLYLLFRRRAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=351301 E2636_RS01740 WP_134208439.1 342000..342950(+) (ceuB) [Paenisporosarcina antarctica strain CGMCC 1.6503]
ATGAAGAAAACCATATTAATCGTGGCGCTAGTCATATTATCAATTGGGTCATTGTTTGTTGGAGTTAGTTCCATAACACC
AGCTGATTTAATCGATTTTAAATCAGAAGAAACACAAATCTTTCTGATTAGTCGACTACCACGCTTGGTCGCCATCCTAC
TTGCTGGTGCTGGAATGAGCATCGCTGGTTTAATTATGCAAAGTCTAAGTAGGAATAAGTTTGTTTCCCCAACGACTGCA
GGAACGCTCGATGCAACACGTTTAGGTATTCTTGTATCGATGTTGCTTTTCACAAATGCATCGATGTTAGAAAAAATGAC
AGTAGCCTTTGTATTTGCGCTTGCCGGCACGTTTTTATTTATGCAAATACTTAATCGTATTAAGTTCAAGGACGCTATTT
TTATTCCCCTAGTAGGTATGATGTTCGGAAATATTCTTTCGTCCATCGCTACTTTCTTTGCCTATAGAGCAGATGTAATT
CAAAATATGTCTGCGTGGCTACAAGGTGACTTTTCTATGATGATGAAAGGTCGCTATGAGCTACTATATATAAGCATCCC
AGTTCTAATTGTCGCTTATTTATTTGCAAACCGGTTTACTGTCGCGGGAATGGGTGAAGATTTTTCGGTGAATTTAGGTC
TTCATTATAAAAGGATTGTAAATTTGGGTTTAATTTTAGTGGCTTTAATTACGGTGACAGTTGTTTTGACAGTTGGTGTT
ATTCCGTTTCTAGGGTTGATCATTCCAAATATTGTATCCATTTTTAAAGGAGATCATTTAGAAAAGACGTTGCCACATAC
CGCACTTCTTGGTGCACTTTTCTTATTGGTGTGTGACATATTGGGTCGAATTATCATTTTCCCTTATGAAATTCCTATTA
GTTTAATGGTAGGAGTTATAGGCAGTGGGATTTTCCTTTACCTATTGTTCAGAAGGAGGGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.846

98.734

0.532

Multiple sequence alignment