Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E2R62_RS16360 Genome accession   NZ_CP038008
Coordinates   3418511..3419971 (+) Length   486 a.a.
NCBI ID   WP_042623004.1    Uniprot ID   A0A482PRQ3
Organism   Citrobacter rodentium strain DBS100     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3413511..3424971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2R62_RS16335 (E2R62_16645) ilvE 3415068..3415997 (-) 930 WP_012907953.1 branched-chain-amino-acid transaminase -
  E2R62_RS16340 (E2R62_16650) ilvM 3416016..3416279 (-) 264 WP_012907954.1 acetolactate synthase 2 small subunit -
  E2R62_RS16345 (E2R62_16655) ilvG 3416276..3417922 (-) 1647 WP_012907955.1 acetolactate synthase 2 catalytic subunit -
  E2R62_RS16350 ilvX 3417925..3417975 (-) 51 WP_217968170.1 peptide IlvX -
  E2R62_RS16355 (E2R62_16660) ilvL 3418061..3418159 (-) 99 WP_001311244.1 ilv operon leader peptide -
  E2R62_RS16360 (E2R62_16665) comM 3418511..3419971 (+) 1461 WP_042623004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E2R62_RS16365 (E2R62_16670) maoP 3420057..3420395 (-) 339 WP_012907956.1 macrodomain Ori organization protein MaoP -
  E2R62_RS16370 (E2R62_16675) hdfR 3420514..3421347 (+) 834 WP_012907957.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 486 a.a.        Molecular weight: 52810.32 Da        Isoelectric Point: 7.2585

>NTDB_id=351214 E2R62_RS16360 WP_042623004.1 3418511..3419971(+) (comM) [Citrobacter rodentium strain DBS100]
MSLSIVHTRAALGVHAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHRLNQYELVGELALTGALRGVPGAISSATEAIRAGRGIIVAKENEEEVGLIGGDGCLVADHL
QAVCAFLEGKQSLDHPTASEAAPCATHEDLRDIIGQEQGKRSLEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLSNE
EAQESAAILSLVNATCVQKQWKQRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLARLSGPFLDRFDLSLEIPLLPPGILRQTELKG
ESSDTVKRRVIAAQSRQYQRQGKLNAHLHSREIRQYCSLAAEDSQWLEETLIHLGLSIRAWQRLLKVSRTIADLEQAEEI
TRRHLQ

Nucleotide


Download         Length: 1461 bp        

>NTDB_id=351214 E2R62_RS16360 WP_042623004.1 3418511..3419971(+) (comM) [Citrobacter rodentium strain DBS100]
ATGTCACTGTCTATTGTTCATACGCGAGCTGCGCTTGGCGTTCACGCCCCAGCCATCACTATCGAAGTTCATATCAGTAA
TGGTCTGCCCGGTTTAACCCTGGTGGGTTTGCCGGAAACCACCGTTAAAGAGGCTCGCGACCGGGTGCGTAGCGCCATCA
TCAATAGCGGTTATGAATTTCCGGCGAAAAAAATCACCATTAACCTGGCTCCGGCCGATCTGCCGAAAGAGGGAGGAAGG
TACGATTTACCTATCGCTGTCGCGCTTCTGGCGGCTTCAGAACAGCTTACAACCCATAGGCTTAATCAATACGAGTTAGT
GGGCGAATTAGCGCTTACAGGCGCGCTACGCGGCGTTCCTGGCGCCATATCCAGCGCAACGGAAGCGATACGGGCAGGAA
GAGGCATCATTGTCGCCAAAGAGAACGAAGAGGAAGTCGGGCTTATTGGTGGCGATGGCTGCCTGGTGGCCGATCATTTG
CAGGCCGTCTGCGCTTTTCTGGAAGGAAAGCAGTCGCTTGATCATCCCACCGCCAGTGAAGCTGCGCCCTGCGCTACGCA
TGAGGATCTGCGCGATATCATTGGTCAGGAGCAAGGTAAACGCAGTCTCGAAATTACGGCGGCAGGCGGACATAACCTGC
TGTTGATAGGTCCACCAGGTACAGGGAAAACGATGCTGGCCAGCCGTCTCAATGGACTTTTGCCGCCGCTGAGCAACGAG
GAGGCGCAGGAGAGCGCGGCTATCCTCAGCCTGGTCAACGCAACCTGTGTGCAAAAGCAGTGGAAACAACGCCCTTTTCG
GGCGCCGCATCACAGCGCATCCCTGACGGCAATGGTCGGCGGCGGCTCAATCCCCGCGCCGGGAGAAATATCGCTGGCGC
ATAACGGCATACTTTTTCTGGATGAATTACCCGAATTTGAACGCCGCACCCTGGATGCGCTACGTGAACCCATTGAATCC
GGTCAGATTCATCTTTCGCGTACGCGAGCCAAGATCACTTATCCCGCCCGCTTTCAGCTGGTTGCGGCTATGAATCCCAG
CCCTACGGGGCATTATCAGGGCAATCATAACCGCTGTACGCCCGAACAGACGCTGCGCTATCTCGCCCGACTCTCCGGTC
CGTTTCTTGATCGCTTTGATCTCTCACTGGAGATCCCTTTACTGCCGCCTGGCATTCTCAGGCAAACGGAGCTCAAAGGG
GAAAGTAGCGATACGGTAAAACGGCGGGTCATCGCCGCACAGTCGCGCCAGTATCAGCGCCAGGGCAAACTGAATGCACA
TTTACACAGCAGGGAGATTCGCCAGTATTGTTCGCTGGCTGCTGAGGATTCGCAGTGGCTGGAGGAGACGCTTATCCATC
TCGGGTTATCAATACGGGCGTGGCAGCGGCTATTGAAAGTATCGAGGACCATTGCCGATCTTGAACAGGCGGAGGAGATT
ACACGCCGGCACTTGCAGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-485)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-387)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A482PRQ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.146

100

0.599
  comM Vibrio cholerae strain A1552

59.465

100

0.595
  comM Glaesserella parasuis strain SC1401

58.215

100

0.591
  comM Vibrio campbellii strain DS40M4

58.436

100

0.584
  comM Legionella pneumophila str. Paris

47.561

100

0.481
  comM Legionella pneumophila strain ERS1305867

47.561

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.169

100

0.432

Multiple sequence alignment