Detailed information NTG0351196

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: DCC84_RS32890
• Genome accession: NZ_CP038001
• Coordinates: 6933272..6934768 (+)
• Length: 498 a.a.
• NCBI ID: WP_003208777.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SXM-1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 6928272..6939768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DCC84_RS32865 (DCC84_32865)	-	6928471..6929811 (-)	1341	WP_008439352.1	ammonium transporter	-
DCC84_RS32870 (DCC84_32870)	glnK	6929846..6930184 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
DCC84_RS32875 (DCC84_32875)	-	6930658..6930867 (+)	210	WP_371103568.1	accessory factor UbiK family protein	-
DCC84_RS32880 (DCC84_32880)	cfa	6930920..6932002 (-)	1083	WP_003208781.1	cyclopropane fatty acyl phospholipid synthase	-
DCC84_RS32885 (DCC84_32885)	-	6932266..6933174 (+)	909	WP_134327521.1	LysR family transcriptional regulator	-
DCC84_RS32890 (DCC84_32890)	comM	6933272..6934768 (+)	1497	WP_003208777.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
DCC84_RS32895 (DCC84_32895)	-	6934755..6935339 (-)	585	WP_003208775.1	TetR/AcrR family transcriptional regulator	-
DCC84_RS32900 (DCC84_32900)	-	6935454..6936377 (+)	924	WP_008439408.1	ABC transporter six-transmembrane domain-containing protein	-
DCC84_RS32905 (DCC84_32905)	-	6936495..6938471 (-)	1977	WP_008439409.1	methyl-accepting chemotaxis protein	-
DCC84_RS32910 (DCC84_32910)	-	6938650..6939570 (-)	921	WP_003208769.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 53268.52 Da
• Isoelectric Point: 8.2666

>NTDB_id=351196 DCC84_RS32890 WP_003208777.1 6933272..6934768(+) (comM) [Pseudomonas sp. SXM-1]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALTLDNVECLGELALSGEVRPVKGVLPAALAARKVGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPFVSSGLMYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCGYVGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHVTVARESTALNPGIQS
GDDTASASVLVADARDRQQRRQGCANAFLDLPGLRQHCKLEKADEGWLESACERLTLSLRAAHRLLKVARTLADLEQVEA
IARHHLAEALQYRPASAS

Nucleotide

• Length: 1497 bp

>NTDB_id=351196 DCC84_RS32890 WP_003208777.1 6933272..6934768(+) (comM) [Pseudomonas sp. SXM-1]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATAGGCGTCGAAGCGCCCGCCGTCACTGTCGAGGTGCACATGGCCAA
CGGCTTGCCGTCGCTGACGCTGGTGGGCCTGCCGGAAACCGCCGTCAAGGAAAGCAAAGACCGCGTGCGCAGCGCCATTC
TCAATTCTGCGCTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGC
TTTGATTTGGCGATTGCCCTGGGGATTCTCGCCGCCAGCGTGCAGGTACCGGCGCTGACCCTCGATAACGTGGAATGCCT
GGGCGAGCTGGCGCTGTCCGGTGAGGTGCGGCCGGTGAAAGGTGTGTTGCCCGCAGCCCTGGCGGCGCGCAAGGTCGGGC
GCACCTTGATCGTGCCGCGGGCCAATGCCGAGGAAGCCTGCCTGGCTTCGGGGTTGAAGGTGATTGCCGTGGATCACCTG
CTGCAAGTGGTGGCGCACCTGAACGGTCACGTGCCGATCGAGCCCTTCGTTTCCAGTGGCCTGATGTACTTGAACAAACC
CTACCCGGACCTGAGTGAAGTGCAGGGCCAGCTGGCAGCCAAGCGTGCGCTGTTGATCGCTGCGGCGGGCGCCCACAACC
TGTTGCTCAGCGGGCCACCGGGCACCGGCAAGACCTTGCTCGCCAGCCGTCTACCAGGGTTGTTGCCGCCCTTGAGTGAA
CAGGAAGCGCTGGAGGTGGCGGCGATTCAATCGGTGGTCAGCCTGGCGCCGCTGAGCCATTGGCCACACCGGCCATTTCG
CCAGCCGCATCATTCGGCATCCGGCCCGGCGCTGGTGGGCGGCGGCTCGAAACCGCAGCCGGGGGAAATAACCCTGGCCC
ATCACGGTGTGTTGTTTCTCGACGAGTTGCCGGAGTTTGATCGCAAGGTCCTGGAGGTGCTGCGTGAGCCGCTCGAGTCC
GGGCATATCGTGATTTCCCGCGCTCGCGACCGGGTGCGTTTCCCGGCGCGCTTTCAGTTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGCTATGTGGGCGAGCCCAGTGGGCGCTGTCGCTGCACGCCGGAGCAGATTCAGCGCTATCGCAACAAACTCT
CGGGGCCGCTGCTGGACCGGATCGACCTGCACGTGACCGTCGCCCGGGAAAGCACCGCGCTGAACCCGGGCATACAGTCC
GGTGATGATACCGCCAGCGCCTCCGTCCTCGTCGCCGATGCCCGGGACCGCCAACAACGGCGCCAGGGCTGCGCCAATGC
GTTTCTCGACCTGCCGGGGCTACGCCAGCACTGCAAACTGGAAAAGGCTGATGAAGGCTGGCTGGAAAGCGCCTGCGAAC
GGCTGACGCTGTCGTTGCGGGCAGCCCATCGCCTGCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAACAAGTGGAAGCC
ATCGCCCGCCATCATCTGGCGGAGGCCTTGCAGTACCGCCCTGCTAGCGCGTCCTAG

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (404-493)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	57.374	99.398	0.57
comM	Vibrio campbellii strain DS40M4	56.364	99.398	0.56
comM	Glaesserella parasuis strain SC1401	55.289	100	0.556
comM	Haemophilus influenzae Rd KW20	54.691	100	0.55
comM	Legionella pneumophila str. Paris	51.21	99.598	0.51
comM	Legionella pneumophila strain ERS1305867	51.21	99.598	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.322	100	0.468