Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E2H98_RS14880 | Genome accession | NZ_CP037953 |
| Coordinates | 3288514..3289011 (+) | Length | 165 a.a. |
| NCBI ID | WP_133590097.1 | Uniprot ID | A0A4R6UQ49 |
| Organism | Permianibacter aggregans strain HW001 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3283514..3294011
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E2H98_RS14865 (E2H98_14805) | - | 3283802..3286222 (-) | 2421 | WP_133590103.1 | ADOP family duplicated permease | - |
| E2H98_RS14870 (E2H98_14810) | - | 3286235..3286939 (-) | 705 | WP_133590101.1 | ABC transporter ATP-binding protein | - |
| E2H98_RS14875 (E2H98_14815) | - | 3286965..3288215 (-) | 1251 | WP_133590099.1 | efflux RND transporter periplasmic adaptor subunit | - |
| E2H98_RS14880 (E2H98_14820) | ssb | 3288514..3289011 (+) | 498 | WP_133590097.1 | single-stranded DNA-binding protein | Machinery gene |
| E2H98_RS14885 (E2H98_14825) | - | 3289266..3290663 (+) | 1398 | WP_133590095.1 | S9 family peptidase | - |
| E2H98_RS14890 (E2H98_14830) | - | 3290673..3291464 (-) | 792 | WP_133590093.1 | ABC transporter substrate-binding protein | - |
| E2H98_RS14895 (E2H98_14835) | - | 3291624..3293522 (+) | 1899 | WP_133590091.1 | EAL domain-containing protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18056.93 Da Isoelectric Point: 5.3172
>NTDB_id=350947 E2H98_RS14880 WP_133590097.1 3288514..3289011(+) (ssb) [Permianibacter aggregans strain HW001]
MASRGVNKVIIVGNLGRDPEVRYTPGGDAIANLTVATSESWKDKQTGEPKEITEWHRVVAYGRLAQIMGEYLRKGSKVYI
EGSLRTRQWEKDGQKHYTTEIRCNEMQMLDSARSGGGSSSYDEGGGSYGGGGNQQPARRPASNQPAPAMADEGFNDPPFD
EDIPF
MASRGVNKVIIVGNLGRDPEVRYTPGGDAIANLTVATSESWKDKQTGEPKEITEWHRVVAYGRLAQIMGEYLRKGSKVYI
EGSLRTRQWEKDGQKHYTTEIRCNEMQMLDSARSGGGSSSYDEGGGSYGGGGNQQPARRPASNQPAPAMADEGFNDPPFD
EDIPF
Nucleotide
Download Length: 498 bp
>NTDB_id=350947 E2H98_RS14880 WP_133590097.1 3288514..3289011(+) (ssb) [Permianibacter aggregans strain HW001]
ATGGCATCTCGTGGAGTCAATAAAGTCATCATCGTCGGCAATTTGGGCCGCGATCCGGAAGTGCGTTACACCCCCGGTGG
TGACGCCATCGCTAACTTAACCGTAGCGACCAGCGAAAGCTGGAAAGATAAGCAAACCGGTGAACCGAAAGAAATCACCG
AATGGCACCGCGTTGTCGCCTATGGCCGTTTGGCGCAAATCATGGGTGAATACCTGCGCAAAGGCTCGAAGGTCTATATC
GAAGGCAGCCTGCGTACCCGTCAGTGGGAAAAAGACGGTCAGAAACATTACACCACCGAAATCCGCTGCAACGAAATGCA
AATGCTCGACAGCGCTCGCAGCGGCGGCGGTTCCTCTTCTTATGATGAAGGTGGCGGCAGCTACGGCGGTGGCGGCAACC
AACAGCCTGCTCGTCGTCCAGCCTCGAATCAACCGGCTCCGGCGATGGCCGATGAGGGCTTCAATGATCCGCCGTTTGAT
GAAGATATTCCGTTCTGA
ATGGCATCTCGTGGAGTCAATAAAGTCATCATCGTCGGCAATTTGGGCCGCGATCCGGAAGTGCGTTACACCCCCGGTGG
TGACGCCATCGCTAACTTAACCGTAGCGACCAGCGAAAGCTGGAAAGATAAGCAAACCGGTGAACCGAAAGAAATCACCG
AATGGCACCGCGTTGTCGCCTATGGCCGTTTGGCGCAAATCATGGGTGAATACCTGCGCAAAGGCTCGAAGGTCTATATC
GAAGGCAGCCTGCGTACCCGTCAGTGGGAAAAAGACGGTCAGAAACATTACACCACCGAAATCCGCTGCAACGAAATGCA
AATGCTCGACAGCGCTCGCAGCGGCGGCGGTTCCTCTTCTTATGATGAAGGTGGCGGCAGCTACGGCGGTGGCGGCAACC
AACAGCCTGCTCGTCGTCCAGCCTCGAATCAACCGGCTCCGGCGATGGCCGATGAGGGCTTCAATGATCCGCCGTTTGAT
GAAGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
52.486 |
100 |
0.576 |
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.558 |
| ssb | Neisseria meningitidis MC58 |
42.614 |
100 |
0.455 |
| ssb | Neisseria gonorrhoeae MS11 |
42.135 |
100 |
0.455 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
33.333 |
100 |
0.37 |