Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E2H97_RS01995 Genome accession   NZ_CP037951
Coordinates   466215..466838 (-) Length   207 a.a.
NCBI ID   WP_133405572.1    Uniprot ID   -
Organism   Parashewanella tropica strain MEBiC05444     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 461215..471838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2H97_RS01970 - 461560..462498 (-) 939 WP_133405567.1 LysR family transcriptional regulator -
  E2H97_RS01975 - 462663..463322 (+) 660 WP_133405568.1 class I SAM-dependent methyltransferase -
  E2H97_RS01980 - 463342..464472 (+) 1131 WP_133405569.1 DUF3500 domain-containing protein -
  E2H97_RS01985 - 464465..464998 (+) 534 WP_133405570.1 DUF1007 family protein -
  E2H97_RS01990 - 465377..466141 (+) 765 WP_133405571.1 MBL fold metallo-hydrolase -
  E2H97_RS01995 ssb 466215..466838 (-) 624 WP_133405572.1 single-stranded DNA-binding protein Machinery gene
  E2H97_RS02000 - 466912..468279 (-) 1368 WP_133405573.1 MFS transporter -
  E2H97_RS02005 uvrA 468654..471482 (+) 2829 WP_133405574.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23047.16 Da        Isoelectric Point: 5.2439

>NTDB_id=350888 E2H97_RS01995 WP_133405572.1 466215..466838(-) (ssb) [Parashewanella tropica strain MEBiC05444]
MASRGVNKVILVGNLGRDPEVRYMPNGNAVANFTIATSETWKDQQGQQQERTEWHNIVMYRRLAEIAGEYLKKGAKVYIE
GRLQTSKWQDQQTGQDRYKTEIVGNEMQMLDSRQGGSMGGNQGGYGAQNQQAPAQQPQTSGYGAPQQQAQQSYQPQQPQQ
SYQSQQQAPAQQAPAQQAKPAQSAPQQPAQQSYTPNLDDGWDDDIPF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=350888 E2H97_RS01995 WP_133405572.1 466215..466838(-) (ssb) [Parashewanella tropica strain MEBiC05444]
ATGGCCAGCCGTGGTGTGAACAAAGTAATTTTAGTAGGTAATTTAGGGCGCGATCCTGAAGTACGTTATATGCCAAATGG
CAATGCGGTAGCCAACTTTACCATTGCAACAAGTGAAACATGGAAAGACCAACAAGGTCAGCAACAAGAACGTACTGAAT
GGCATAACATTGTTATGTACCGTCGTTTAGCTGAAATTGCGGGTGAATACCTTAAGAAAGGTGCCAAGGTTTATATTGAA
GGTCGCCTACAAACCAGCAAGTGGCAAGATCAACAAACTGGTCAAGATCGTTATAAGACCGAAATCGTTGGTAATGAAAT
GCAAATGCTAGATAGCCGTCAAGGTGGTAGCATGGGTGGCAACCAAGGCGGTTATGGTGCACAAAACCAGCAAGCTCCTG
CACAGCAGCCACAAACGTCTGGTTATGGTGCTCCACAGCAGCAAGCTCAACAAAGCTATCAACCTCAGCAGCCACAACAG
AGCTATCAGTCACAGCAACAAGCGCCAGCACAGCAAGCGCCTGCTCAACAAGCTAAGCCTGCTCAATCTGCACCTCAACA
ACCTGCTCAACAAAGCTATACGCCAAACTTGGATGATGGCTGGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.738

100

0.556
  ssb Glaesserella parasuis strain SC1401

50.476

100

0.512
  ssb Neisseria meningitidis MC58

50.971

99.517

0.507
  ssb Neisseria gonorrhoeae MS11

50.485

99.517

0.502

Multiple sequence alignment