Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E2F51_RS08095 Genome accession   NZ_CP037950
Coordinates   1618521..1620041 (-) Length   506 a.a.
NCBI ID   WP_134823174.1    Uniprot ID   -
Organism   Erwinia sp. QL-Z3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1613521..1625041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E2F51_RS08085 (E2F51_08085) hdfR 1617211..1618035 (-) 825 WP_041692181.1 HTH-type transcriptional regulator HdfR -
  E2F51_RS08090 (E2F51_08090) - 1618157..1618495 (+) 339 WP_013200220.1 DUF413 domain-containing protein -
  E2F51_RS08095 (E2F51_08095) comM 1618521..1620041 (-) 1521 WP_134823174.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E2F51_RS08100 (E2F51_08100) ilvL 1620387..1620485 (+) 99 WP_071822090.1 ilv operon leader peptide -
  E2F51_RS08105 (E2F51_08105) ilvG 1620626..1622272 (+) 1647 WP_134823175.1 acetolactate synthase 2 catalytic subunit -
  E2F51_RS08110 (E2F51_08110) ilvM 1622269..1622526 (+) 258 WP_041691853.1 acetolactate synthase 2 small subunit -
  E2F51_RS08115 (E2F51_08115) - 1622546..1623472 (+) 927 WP_013200223.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55171.43 Da        Isoelectric Point: 8.4895

>NTDB_id=350879 E2F51_RS08095 WP_134823174.1 1618521..1620041(-) (comM) [Erwinia sp. QL-Z3]
MSLSLAYTRAAIGIEAPLVLVEVHLSNGLPALSLVGLPETTVKEARDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILAASEQIPAEKLGQYEFLGELALTGALRGVQGAIPAALAATQAQRQLILSSDNLEEVGMIHEAKSLLSGHL
LNVCHFLAGHTTLEEARCELPEVGWQGGDLSDIVGQQQAKRALEICAAGGHNLLLIGPPGTGKTMLATRLTGLMPSLSNE
EALESAAIASLVSTGVLHQQWRQRPFRAPHHTSSRYALVGGGSMPKPGEISLAHNGILFLDELPEFDRKTLDALREPLES
GEICISRARAKVTYPARFQLIAAMNPSPTGHYQGTHNRSTPQQTLRYLNKLSGPFLDRFDLSLEVPLLPPGTLSRQNANS
ESSTTIRLRVIAARQRQLDRAGKINALIQPKEIKRDCRITQQDAQWLEEVLNQLGLSVRAWQRILKVARTIADLGKKESI
QREHLHEALSYRGIDRLLSHLQKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=350879 E2F51_RS08095 WP_134823174.1 1618521..1620041(-) (comM) [Erwinia sp. QL-Z3]
ATGTCGCTATCTCTCGCCTATACCCGAGCCGCTATTGGTATCGAGGCGCCATTGGTGTTGGTTGAAGTTCATCTCAGTAA
TGGCCTGCCCGCGCTTTCACTGGTGGGTCTGCCTGAAACGACGGTAAAAGAAGCCCGCGATCGGGTACGCAGTGCCATCA
TCAACTGTGGCTTTACCTTTCCCGCTAAACGCATCACCGTCAATCTTGCGCCAGCCGATCTTCCGAAAGAAGGAGGAAGA
TACGATCTTCCTATCGCAATAGCGATTCTGGCGGCCTCAGAGCAGATTCCTGCGGAGAAGTTGGGGCAATATGAATTCCT
GGGAGAGTTAGCTTTAACAGGTGCTCTCCGTGGCGTACAGGGCGCTATTCCCGCAGCGCTGGCAGCCACTCAGGCACAGC
GCCAGCTGATCTTGTCGAGCGATAACCTTGAAGAGGTCGGCATGATCCACGAGGCGAAAAGCTTGCTGAGCGGTCATCTA
TTAAACGTTTGCCATTTTCTGGCCGGCCACACAACGCTTGAAGAGGCACGATGTGAGTTACCTGAGGTAGGCTGGCAAGG
AGGAGACCTCAGTGACATCGTGGGTCAGCAACAGGCGAAGCGGGCACTGGAAATTTGTGCCGCCGGTGGGCATAACCTGT
TACTGATTGGGCCACCCGGCACAGGGAAGACCATGCTTGCCACCAGGCTAACCGGGTTGATGCCATCATTAAGCAATGAG
GAGGCCCTGGAGAGCGCCGCCATCGCCAGCCTGGTCAGCACAGGTGTCCTGCATCAGCAATGGCGACAGCGCCCATTCCG
GGCCCCTCATCACACGTCATCACGCTATGCACTGGTCGGTGGCGGTTCAATGCCAAAACCCGGCGAGATTTCGCTGGCAC
ACAATGGCATTCTGTTTCTGGATGAGCTGCCAGAGTTTGATCGTAAAACGCTGGATGCGCTGAGAGAACCGCTGGAGTCT
GGTGAGATTTGTATTTCACGCGCGCGGGCGAAAGTGACCTACCCGGCGCGCTTTCAGTTAATAGCCGCAATGAACCCCAG
CCCGACGGGTCATTATCAGGGTACCCATAATCGCAGCACGCCGCAGCAGACGCTTCGCTACCTCAACAAACTGTCCGGGC
CGTTCCTCGATCGTTTCGATCTGTCGCTTGAAGTCCCTCTGCTTCCACCTGGCACACTGAGCAGGCAAAACGCCAACAGT
GAAAGCAGCACCACTATTCGGCTGAGGGTGATTGCGGCCCGACAACGCCAGCTTGATCGTGCCGGAAAGATTAATGCCCT
TATTCAGCCCAAAGAAATTAAGCGCGATTGCCGGATAACGCAGCAGGATGCGCAGTGGCTCGAAGAGGTGTTGAATCAGT
TAGGTCTGTCAGTTCGCGCCTGGCAGCGTATTCTGAAGGTTGCCCGCACGATTGCAGATTTAGGAAAGAAGGAGAGTATT
CAGCGAGAGCACCTGCACGAGGCGCTAAGTTATCGGGGGATCGACAGGTTACTTAGCCATCTACAGAAAAGTCTGGAATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.858

100

0.619
  comM Glaesserella parasuis strain SC1401

61.341

100

0.615
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.163

99.209

0.587
  comM Legionella pneumophila str. Paris

49.703

99.802

0.496
  comM Legionella pneumophila strain ERS1305867

49.703

99.802

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.533

99.407

0.443

Multiple sequence alignment