Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KKOR_RS03560 Genome accession   NC_013166
Coordinates   722567..723475 (+) Length   302 a.a.
NCBI ID   WP_012800642.1    Uniprot ID   -
Organism   Kangiella koreensis DSM 16069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 717567..728475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKOR_RS03545 (Kkor_0705) - 717642..719351 (+) 1710 WP_012800639.1 PglL family O-oligosaccharyltransferase -
  KKOR_RS03550 (Kkor_0706) pilB 719444..721156 (+) 1713 WP_012800640.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KKOR_RS03555 (Kkor_0707) pilC 721280..722524 (+) 1245 WP_012800641.1 type II secretion system F family protein Machinery gene
  KKOR_RS03560 (Kkor_0708) pilD 722567..723475 (+) 909 WP_012800642.1 A24 family peptidase Machinery gene
  KKOR_RS03565 (Kkor_0709) coaE 723528..724127 (+) 600 WP_012800643.1 dephospho-CoA kinase -
  KKOR_RS03570 (Kkor_0710) zapD 724135..724902 (+) 768 WP_012800644.1 cell division protein ZapD -
  KKOR_RS03575 (Kkor_0711) ampE 725006..725875 (+) 870 WP_012800645.1 regulatory signaling modulator protein AmpE -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 33070.50 Da        Isoelectric Point: 8.0869

>NTDB_id=35081 KKOR_RS03560 WP_012800642.1 722567..723475(+) (pilD) [Kangiella koreensis DSM 16069]
MIEILSTNLPVLAGLVFILGLLTGSFLNVVIHRLPLILNREWRTTATEILTEANCTVSCPKDGLPEKYNLMTPASACPKC
HHKITALENIPVFSWLVLRGKCSNCKAKISGRYPFVELLTAVTFMVCAITFGWSWSLAFALILTCFLVAGSYIDYDHKIL
PDQLTLPLVWIGLVAALWLAPELAQTGFAKDLPSAVIGALAGYLSLWSIYWLFKLLTGKEGMGHGDFKLLAALGAFLGWQ
MLPLVILLSTVTGAVLGIVAMVVSKQGRDYKIPFGPFLAIAGWIALIWGETITNTYIQMLQP

Nucleotide


Download         Length: 909 bp        

>NTDB_id=35081 KKOR_RS03560 WP_012800642.1 722567..723475(+) (pilD) [Kangiella koreensis DSM 16069]
ATGATTGAAATTCTTTCAACAAACCTGCCCGTGTTGGCAGGTTTGGTTTTTATACTGGGGCTATTAACGGGTAGTTTTTT
GAACGTGGTCATTCATCGACTACCGTTAATTCTAAATCGTGAATGGCGTACTACTGCAACTGAAATTTTGACTGAAGCCA
ATTGCACCGTTTCTTGCCCTAAAGATGGTCTTCCTGAAAAATATAATCTGATGACTCCGGCTTCGGCATGTCCCAAGTGT
CACCATAAGATCACTGCCTTGGAGAATATTCCGGTTTTTAGCTGGTTAGTTTTAAGAGGAAAGTGTTCCAACTGCAAAGC
CAAAATCAGCGGTCGTTATCCTTTTGTTGAGCTCCTGACGGCTGTAACATTTATGGTGTGTGCCATTACCTTTGGTTGGT
CCTGGTCACTGGCATTCGCCTTAATATTGACCTGTTTCTTGGTTGCTGGTAGCTATATCGATTATGACCATAAGATTCTG
CCGGATCAATTAACCCTACCATTAGTCTGGATTGGTTTGGTGGCCGCACTTTGGCTGGCACCTGAGCTTGCTCAAACAGG
CTTCGCTAAAGACTTACCATCGGCCGTTATTGGTGCCTTAGCGGGCTATTTGTCTCTTTGGTCGATCTATTGGCTATTTA
AGCTACTGACCGGCAAAGAAGGCATGGGACATGGGGATTTTAAATTGCTTGCGGCGTTAGGAGCTTTCCTAGGATGGCAG
ATGCTGCCTTTAGTAATTTTATTATCCACGGTAACAGGTGCTGTTTTAGGTATTGTGGCGATGGTAGTTAGCAAGCAGGG
GCGTGATTATAAAATCCCATTTGGCCCCTTTTTGGCTATTGCTGGCTGGATTGCCCTAATTTGGGGTGAGACGATTACCA
ATACCTATATTCAAATGTTGCAGCCTTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(141-258)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.425

96.689

0.517
  pilD Vibrio campbellii strain DS40M4

52.143

92.715

0.483
  pilD Neisseria gonorrhoeae MS11

46.528

95.364

0.444
  pilD Acinetobacter nosocomialis M2

42.667

99.338

0.424
  pilD Acinetobacter baumannii D1279779

42.333

99.338

0.421

Multiple sequence alignment