Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | KKOR_RS03555 | Genome accession | NC_013166 |
| Coordinates | 721280..722524 (+) | Length | 414 a.a. |
| NCBI ID | WP_012800641.1 | Uniprot ID | C7R9N6 |
| Organism | Kangiella koreensis DSM 16069 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 716280..727524
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KKOR_RS03535 (Kkor_0703) | - | 716373..716678 (+) | 306 | WP_012800637.1 | GIY-YIG nuclease family protein | - |
| KKOR_RS13710 (Kkor_0704) | - | 717125..717571 (+) | 447 | WP_012800638.1 | pilin | - |
| KKOR_RS03545 (Kkor_0705) | - | 717642..719351 (+) | 1710 | WP_012800639.1 | PglL family O-oligosaccharyltransferase | - |
| KKOR_RS03550 (Kkor_0706) | pilB | 719444..721156 (+) | 1713 | WP_012800640.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KKOR_RS03555 (Kkor_0707) | pilC | 721280..722524 (+) | 1245 | WP_012800641.1 | type II secretion system F family protein | Machinery gene |
| KKOR_RS03560 (Kkor_0708) | pilD | 722567..723475 (+) | 909 | WP_012800642.1 | A24 family peptidase | Machinery gene |
| KKOR_RS03565 (Kkor_0709) | coaE | 723528..724127 (+) | 600 | WP_012800643.1 | dephospho-CoA kinase | - |
| KKOR_RS03570 (Kkor_0710) | zapD | 724135..724902 (+) | 768 | WP_012800644.1 | cell division protein ZapD | - |
| KKOR_RS03575 (Kkor_0711) | ampE | 725006..725875 (+) | 870 | WP_012800645.1 | regulatory signaling modulator protein AmpE | - |
Sequence
Protein
Download Length: 414 a.a. Molecular weight: 44853.67 Da Isoelectric Point: 9.2103
>NTDB_id=35080 KKOR_RS03555 WP_012800641.1 721280..722524(+) (pilC) [Kangiella koreensis DSM 16069]
MATAVKRKSAKSKKTKLKNFQWVGVNKQGNKMKGKMPAESADAVKQQLLKQGIKPKTVNAELFSFGASKKPIKPIDIAVF
LRQLAIMMKAGVPLVQSFDIIGKGHENPSVQDLVMDIKTDVESGNPFADSLRNHPKYFDDLVCDLIHAGEQSGTLEQMLD
RIATYKEKTEALKSKIKSAMMYPAAVITVSLAVTAILLIYVVPMFEDLFSNAGADLPALTAMVVSMSENMQANWYIYLGL
LIAIVVGYVQLNNKSEKFRDSKDALLLKFPIFGPLIQKAAVARYARTLATTFAAGVPLVDALDSAAGASGNAVYRKAIMK
IKEDVTTGLQINLAMISTGVFPNMVNQMVAIGEESGAVDTMLAKVADIYEQEVDDAVDGLSSLIEPFVIVFIGGVVGTII
VAMYLPIFKLGDAF
MATAVKRKSAKSKKTKLKNFQWVGVNKQGNKMKGKMPAESADAVKQQLLKQGIKPKTVNAELFSFGASKKPIKPIDIAVF
LRQLAIMMKAGVPLVQSFDIIGKGHENPSVQDLVMDIKTDVESGNPFADSLRNHPKYFDDLVCDLIHAGEQSGTLEQMLD
RIATYKEKTEALKSKIKSAMMYPAAVITVSLAVTAILLIYVVPMFEDLFSNAGADLPALTAMVVSMSENMQANWYIYLGL
LIAIVVGYVQLNNKSEKFRDSKDALLLKFPIFGPLIQKAAVARYARTLATTFAAGVPLVDALDSAAGASGNAVYRKAIMK
IKEDVTTGLQINLAMISTGVFPNMVNQMVAIGEESGAVDTMLAKVADIYEQEVDDAVDGLSSLIEPFVIVFIGGVVGTII
VAMYLPIFKLGDAF
Nucleotide
Download Length: 1245 bp
>NTDB_id=35080 KKOR_RS03555 WP_012800641.1 721280..722524(+) (pilC) [Kangiella koreensis DSM 16069]
ATGGCAACAGCAGTTAAACGGAAATCAGCTAAATCAAAAAAGACTAAGTTGAAAAATTTCCAGTGGGTAGGTGTTAATAA
GCAGGGTAATAAAATGAAAGGCAAGATGCCTGCTGAAAGCGCTGATGCTGTGAAGCAGCAACTTTTAAAGCAGGGAATTA
AGCCTAAAACGGTTAACGCAGAGCTATTCTCTTTTGGTGCAAGTAAGAAGCCCATTAAACCGATTGATATTGCGGTATTC
TTACGACAGCTAGCGATTATGATGAAAGCTGGTGTACCTTTAGTTCAGTCCTTTGACATTATCGGTAAAGGTCATGAAAA
TCCGAGTGTTCAAGACTTGGTCATGGATATTAAAACTGATGTCGAGTCAGGTAATCCTTTTGCTGACTCTTTACGCAATC
ACCCAAAATACTTCGATGATTTAGTGTGCGATTTAATTCATGCTGGTGAGCAGTCTGGTACTTTAGAGCAAATGCTGGAT
AGAATTGCGACCTATAAAGAAAAGACAGAAGCTCTGAAGTCAAAAATTAAATCAGCCATGATGTATCCTGCAGCAGTAAT
CACGGTATCTCTAGCCGTAACTGCTATTCTTCTTATTTACGTAGTTCCAATGTTTGAGGATTTATTTTCTAATGCTGGAG
CAGACTTGCCTGCTCTTACGGCCATGGTTGTTTCAATGTCGGAGAACATGCAGGCTAATTGGTATATTTACCTAGGGTTG
TTAATAGCTATTGTCGTTGGTTATGTTCAGTTAAATAATAAGTCTGAAAAATTTAGGGATTCAAAGGATGCGTTATTGCT
TAAGTTTCCTATTTTCGGCCCATTAATTCAAAAAGCCGCTGTCGCACGTTATGCTCGTACACTAGCGACCACATTTGCCG
CAGGTGTTCCTTTAGTTGATGCTTTAGATTCTGCCGCAGGAGCTTCTGGTAATGCGGTTTATCGTAAAGCCATCATGAAA
ATTAAAGAAGATGTTACTACGGGTTTGCAAATCAATCTGGCGATGATATCAACCGGGGTTTTCCCAAACATGGTGAATCA
GATGGTTGCGATTGGTGAAGAGTCGGGTGCTGTTGATACCATGCTGGCGAAGGTAGCTGATATTTATGAGCAAGAGGTTG
ATGATGCGGTCGATGGCTTGAGTTCTTTGATTGAGCCGTTTGTTATCGTCTTTATTGGTGGCGTTGTTGGTACAATTATT
GTTGCAATGTACTTGCCAATCTTCAAATTGGGCGATGCTTTCTAA
ATGGCAACAGCAGTTAAACGGAAATCAGCTAAATCAAAAAAGACTAAGTTGAAAAATTTCCAGTGGGTAGGTGTTAATAA
GCAGGGTAATAAAATGAAAGGCAAGATGCCTGCTGAAAGCGCTGATGCTGTGAAGCAGCAACTTTTAAAGCAGGGAATTA
AGCCTAAAACGGTTAACGCAGAGCTATTCTCTTTTGGTGCAAGTAAGAAGCCCATTAAACCGATTGATATTGCGGTATTC
TTACGACAGCTAGCGATTATGATGAAAGCTGGTGTACCTTTAGTTCAGTCCTTTGACATTATCGGTAAAGGTCATGAAAA
TCCGAGTGTTCAAGACTTGGTCATGGATATTAAAACTGATGTCGAGTCAGGTAATCCTTTTGCTGACTCTTTACGCAATC
ACCCAAAATACTTCGATGATTTAGTGTGCGATTTAATTCATGCTGGTGAGCAGTCTGGTACTTTAGAGCAAATGCTGGAT
AGAATTGCGACCTATAAAGAAAAGACAGAAGCTCTGAAGTCAAAAATTAAATCAGCCATGATGTATCCTGCAGCAGTAAT
CACGGTATCTCTAGCCGTAACTGCTATTCTTCTTATTTACGTAGTTCCAATGTTTGAGGATTTATTTTCTAATGCTGGAG
CAGACTTGCCTGCTCTTACGGCCATGGTTGTTTCAATGTCGGAGAACATGCAGGCTAATTGGTATATTTACCTAGGGTTG
TTAATAGCTATTGTCGTTGGTTATGTTCAGTTAAATAATAAGTCTGAAAAATTTAGGGATTCAAAGGATGCGTTATTGCT
TAAGTTTCCTATTTTCGGCCCATTAATTCAAAAAGCCGCTGTCGCACGTTATGCTCGTACACTAGCGACCACATTTGCCG
CAGGTGTTCCTTTAGTTGATGCTTTAGATTCTGCCGCAGGAGCTTCTGGTAATGCGGTTTATCGTAAAGCCATCATGAAA
ATTAAAGAAGATGTTACTACGGGTTTGCAAATCAATCTGGCGATGATATCAACCGGGGTTTTCCCAAACATGGTGAATCA
GATGGTTGCGATTGGTGAAGAGTCGGGTGCTGTTGATACCATGCTGGCGAAGGTAGCTGATATTTATGAGCAAGAGGTTG
ATGATGCGGTCGATGGCTTGAGTTCTTTGATTGAGCCGTTTGTTATCGTCTTTATTGGTGGCGTTGTTGGTACAATTATT
GTTGCAATGTACTTGCCAATCTTCAAATTGGGCGATGCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.653 |
94.686 |
0.546 |
| pilC | Acinetobacter baylyi ADP1 |
54.703 |
97.585 |
0.534 |
| pilC | Legionella pneumophila strain ERS1305867 |
54.523 |
96.135 |
0.524 |
| pilC | Acinetobacter baumannii D1279779 |
52.97 |
97.585 |
0.517 |
| pilG | Neisseria gonorrhoeae MS11 |
44.862 |
96.377 |
0.432 |
| pilG | Neisseria meningitidis 44/76-A |
43.672 |
97.343 |
0.425 |
| pilC | Vibrio campbellii strain DS40M4 |
42.065 |
95.894 |
0.403 |
| pilC | Vibrio cholerae strain A1552 |
41.519 |
95.411 |
0.396 |
| pilC | Thermus thermophilus HB27 |
38.25 |
96.618 |
0.37 |