Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E1B03_RS01220 Genome accession   NZ_CP037864
Coordinates   54447..55967 (-) Length   506 a.a.
NCBI ID   WP_133085567.1    Uniprot ID   A0A4P6WHU7
Organism   Citrobacter arsenatis strain LY-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 49447..60967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1B03_RS01210 (E1B03_01210) hdfR 53129..53977 (-) 849 WP_133085566.1 HTH-type transcriptional regulator HdfR -
  E1B03_RS01215 (E1B03_01215) maoP 54084..54422 (+) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  E1B03_RS01220 (E1B03_01220) comM 54447..55967 (-) 1521 WP_133085567.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E1B03_RS01225 (E1B03_01225) ilvL 56320..56418 (+) 99 WP_001311244.1 ilv operon leader peptide -
  E1B03_RS01230 (E1B03_01230) ilvG 56558..58204 (+) 1647 WP_133085568.1 acetolactate synthase 2 catalytic subunit -
  E1B03_RS01235 (E1B03_01235) ilvM 58201..58464 (+) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  E1B03_RS01240 (E1B03_01240) - 58482..59411 (+) 930 WP_003018014.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55146.06 Da        Isoelectric Point: 7.2659

>NTDB_id=350264 E1B03_RS01220 WP_133085567.1 54447..55967(-) (comM) [Citrobacter arsenatis strain LY-1]
MSLSIVHTRAALGVNAPAITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRVGRRIIVAKENAAEVGLIHGDGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPNALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLNND
EALESAAILSLVNSDRIQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEVPLPPPGILSQSAVKG
EDSATVKQRVMAARERQYQRQNKLNAYLDSQDIHKYCVLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQCDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=350264 E1B03_RS01220 WP_133085567.1 54447..55967(-) (comM) [Citrobacter arsenatis strain LY-1]
ATGTCACTATCGATTGTTCACACACGCGCCGCACTGGGCGTCAATGCGCCAGCTATAACCGTCGAGGTACATATCAGCAA
CGGATTGCCTGGCTTAACCATGGTGGGGCTGCCTGAAACGACGGTGAAAGAGGCACGCGATCGGGTACGTAGTGCGATAA
TTAATAGCGGTTATGAATACCCGGCAAAAAAGATAACCATAAACCTCGCGCCGGCCGATCTCCCAAAAGAAGGGGGGCGA
TATGATTTACCTATTGCAGTTGCGCTTCTGGCAGCGTCTGAGCAGCTTACAACCCATAACCTCGATACTTATGAGCTGGT
AGGTGAATTAGCGCTTACAGGCGCGTTACGTGGCGTTCCCGGCGCGATATCAAGCGCAACCGAGGCCATTCGAGTAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCCGCTGAAGTTGGACTGATACACGGCGATGGGTGCCTGATAGCCGATCACCTG
CAGGCCGTATGCGCATTTCTTGAAGGTAAGCATGATTTAGACAGGCCATCATCCGCAGATTTTACACCCAACGCATTAGC
CGATGACCTAAGTGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCCGCTGGCGGTCACAACCTCT
TGCTCATTGGCCCGCCGGGTACGGGCAAAACCATGCTGGCCAGTCGCCTAAGGGGACTGCTCCCGCCACTAAACAACGAT
GAAGCGCTGGAAAGTGCCGCGATACTCAGTCTGGTCAATTCCGACAGAATACAAAAACAGTGGAAGCAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACCGCCATGGTCGGTGGAGGCTCGATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTCCTGGATGAACTCCCCGAATTCGAGCGACGCACGCTGGATGCACTGCGCGAACCCATTGAGTCC
GGACAGATACATCTGTCCCGTACCAGAGCAAAAATAACCTATCCCGCACGCTTTCAACTCATAGCGGCAATGAATCCAAG
CCCGACAGGCCATTATCAGGGGAACCATAACCGTTGTACCCCAGAACAGACGCTGCGCTACCTCAATCGATTGTCAGGCC
CATTTCTCGACCGTTTCGATCTCTCCCTTGAAGTCCCTTTACCGCCACCAGGCATACTCAGTCAGAGCGCGGTGAAAGGG
GAAGATAGCGCCACGGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCAGCGGCAAAATAAGTTAAACGCGTA
CCTGGACAGTCAGGATATTCATAAATACTGCGTACTGCGCAGCGACGATGCACAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTGTCTATCCGCGCCTGGTTGCGCCTGATAAAGGTCGCGCGAACAATTGCGGATATCGAACAGTGTGATCACATC
TCTCGCCAACACTTACAGGAAGCCGTTGGGTACCGGGCGATAGACAGGTTACTCATTCATTTGCAAAAACTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6WHU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Glaesserella parasuis strain SC1401

57.564

100

0.579
  comM Vibrio cholerae strain A1552

58.167

99.209

0.577
  comM Vibrio campbellii strain DS40M4

57.341

99.605

0.571
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427

Multiple sequence alignment