Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E0L18_RS00930 | Genome accession | NZ_CP037861 |
| Coordinates | 176146..176574 (+) | Length | 142 a.a. |
| NCBI ID | WP_016569994.1 | Uniprot ID | - |
| Organism | Pasteurella multocida subsp. multocida strain HN01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 134964..205109 | 176146..176574 | within | 0 |
Gene organization within MGE regions
Location: 134964..205109
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0L18_RS00680 (E0L18_00680) | - | 134964..135674 (+) | 711 | Protein_127 | sialidase | - |
| E0L18_RS00685 (E0L18_00685) | - | 135896..136609 (+) | 714 | Protein_128 | site-specific integrase | - |
| E0L18_RS12115 | - | 136938..137624 (-) | 687 | WP_255303073.1 | KilA-N domain-containing protein | - |
| E0L18_RS00695 (E0L18_00695) | - | 137927..138763 (-) | 837 | WP_014390712.1 | KilA-N domain-containing protein | - |
| E0L18_RS00700 (E0L18_00700) | - | 139189..139512 (-) | 324 | WP_139616918.1 | hypothetical protein | - |
| E0L18_RS00705 (E0L18_00705) | - | 139560..145445 (-) | 5886 | WP_139616919.1 | phage tail protein | - |
| E0L18_RS00710 (E0L18_00710) | - | 145449..146069 (-) | 621 | WP_102827074.1 | tail assembly protein | - |
| E0L18_RS00715 (E0L18_00715) | - | 146012..146755 (-) | 744 | WP_139616920.1 | C40 family peptidase | - |
| E0L18_RS00720 (E0L18_00720) | - | 146760..147464 (-) | 705 | WP_139616921.1 | phage minor tail protein L | - |
| E0L18_RS00725 (E0L18_00725) | - | 147660..148796 (-) | 1137 | WP_139616922.1 | RNA-guided endonuclease TnpB family protein | - |
| E0L18_RS00730 (E0L18_00730) | tnpA | 148843..149259 (+) | 417 | WP_005720092.1 | IS200/IS605 family transposase | - |
| E0L18_RS00735 (E0L18_00735) | - | 149512..149862 (-) | 351 | WP_255303074.1 | phage tail protein | - |
| E0L18_RS00740 (E0L18_00740) | - | 149859..152246 (-) | 2388 | WP_139616923.1 | phage tail length tape measure family protein | - |
| E0L18_RS00745 (E0L18_00745) | - | 152233..152538 (-) | 306 | WP_368659735.1 | phage tail assembly protein T | - |
| E0L18_RS00750 (E0L18_00750) | - | 152556..152945 (-) | 390 | WP_139616925.1 | phage minor tail protein G | - |
| E0L18_RS00755 (E0L18_00755) | - | 152951..153457 (-) | 507 | WP_139616926.1 | phage tail tube protein | - |
| E0L18_RS00760 (E0L18_00760) | gpU | 153454..153861 (-) | 408 | WP_115098330.1 | phage tail terminator protein | - |
| E0L18_RS00765 (E0L18_00765) | - | 153858..154409 (-) | 552 | WP_139616927.1 | phage tail protein | - |
| E0L18_RS00770 (E0L18_00770) | - | 154409..154702 (-) | 294 | WP_014391484.1 | hypothetical protein | - |
| E0L18_RS00775 (E0L18_00775) | - | 154695..155021 (-) | 327 | WP_016570083.1 | DUF2190 family protein | - |
| E0L18_RS00780 (E0L18_00780) | - | 155094..157100 (-) | 2007 | WP_139616928.1 | ClpP-like prohead protease/major capsid protein fusion protein | - |
| E0L18_RS00785 (E0L18_00785) | - | 157036..158571 (-) | 1536 | WP_139616929.1 | phage portal protein | - |
| E0L18_RS00790 (E0L18_00790) | - | 158568..158789 (-) | 222 | WP_139616930.1 | hypothetical protein | - |
| E0L18_RS00795 (E0L18_00795) | - | 158786..160894 (-) | 2109 | WP_005719701.1 | phage terminase large subunit family protein | - |
| E0L18_RS00800 (E0L18_00800) | - | 160897..161373 (-) | 477 | WP_139616931.1 | DUF1441 family protein | - |
| E0L18_RS00805 (E0L18_00805) | - | 161653..161829 (+) | 177 | WP_016533221.1 | type II toxin-antitoxin system HicA family toxin | - |
| E0L18_RS00810 (E0L18_00810) | - | 161877..162293 (+) | 417 | WP_016533220.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| E0L18_RS00820 (E0L18_00820) | - | 162518..162841 (-) | 324 | WP_014667795.1 | DUF2570 family protein | - |
| E0L18_RS00825 (E0L18_00825) | - | 162814..163344 (-) | 531 | WP_014667794.1 | lysozyme | - |
| E0L18_RS00830 (E0L18_00830) | - | 163341..163601 (-) | 261 | WP_014391475.1 | holin | - |
| E0L18_RS00835 (E0L18_00835) | - | 163718..164275 (+) | 558 | WP_064964938.1 | hypothetical protein | - |
| E0L18_RS00840 (E0L18_00840) | - | 164402..164767 (-) | 366 | WP_139616933.1 | antiterminator Q family protein | - |
| E0L18_RS00845 (E0L18_00845) | - | 164767..165369 (-) | 603 | WP_139616934.1 | recombination protein NinG | - |
| E0L18_RS00850 (E0L18_00850) | - | 165457..165669 (-) | 213 | WP_139616935.1 | hypothetical protein | - |
| E0L18_RS00855 (E0L18_00855) | - | 165743..166168 (-) | 426 | WP_139616936.1 | recombination protein NinB | - |
| E0L18_RS00860 (E0L18_00860) | - | 166171..166710 (-) | 540 | WP_139616937.1 | MT-A70 family methyltransferase | - |
| E0L18_RS00865 (E0L18_00865) | - | 166707..168071 (-) | 1365 | WP_015691058.1 | replicative DNA helicase | - |
| E0L18_RS00870 (E0L18_00870) | - | 168068..168886 (-) | 819 | WP_139616938.1 | DNA replication protein | - |
| E0L18_RS12120 | - | 169289..169423 (-) | 135 | WP_016569987.1 | hypothetical protein | - |
| E0L18_RS00880 (E0L18_00880) | - | 169490..169942 (-) | 453 | WP_139616939.1 | phage regulatory CII family protein | - |
| E0L18_RS00885 (E0L18_00885) | - | 169992..170177 (-) | 186 | WP_139616940.1 | Cro/CI family transcriptional regulator | - |
| E0L18_RS00890 (E0L18_00890) | - | 170305..171081 (+) | 777 | WP_071523582.1 | XRE family transcriptional regulator | - |
| E0L18_RS00895 (E0L18_00895) | - | 171150..172055 (-) | 906 | WP_064964924.1 | type VI secretion system-associated protein TagO | - |
| E0L18_RS12125 | - | 172278..172409 (+) | 132 | WP_255303076.1 | hypothetical protein | - |
| E0L18_RS00900 (E0L18_00900) | - | 172784..173074 (+) | 291 | WP_139616941.1 | hypothetical protein | - |
| E0L18_RS00905 (E0L18_00905) | - | 173211..173852 (+) | 642 | WP_139616942.1 | DUF3560 domain-containing protein | - |
| E0L18_RS00910 (E0L18_00910) | - | 173896..174192 (+) | 297 | WP_139616943.1 | hypothetical protein | - |
| E0L18_RS00915 (E0L18_00915) | - | 174164..174400 (+) | 237 | WP_075266289.1 | hypothetical protein | - |
| E0L18_RS11910 | - | 174413..174574 (+) | 162 | WP_176558139.1 | hypothetical protein | - |
| E0L18_RS11915 | - | 174577..174735 (+) | 159 | WP_176558141.1 | hypothetical protein | - |
| E0L18_RS00920 (E0L18_00920) | - | 174747..175391 (+) | 645 | WP_139616944.1 | ribonuclease H-like domain-containing protein | - |
| E0L18_RS00925 (E0L18_00925) | - | 175434..176135 (+) | 702 | WP_139616945.1 | ERF family protein | - |
| E0L18_RS00930 (E0L18_00930) | ssb | 176146..176574 (+) | 429 | WP_016569994.1 | single-stranded DNA-binding protein | Machinery gene |
| E0L18_RS00935 (E0L18_00935) | - | 176636..176989 (+) | 354 | WP_014391449.1 | hypothetical protein | - |
| E0L18_RS00940 (E0L18_00940) | - | 177061..177849 (+) | 789 | WP_139616946.1 | DUF2303 family protein | - |
| E0L18_RS00945 (E0L18_00945) | - | 178001..178588 (+) | 588 | WP_139616947.1 | DUF551 domain-containing protein | - |
| E0L18_RS00950 (E0L18_00950) | - | 178847..179065 (+) | 219 | WP_005720317.1 | hypothetical protein | - |
| E0L18_RS00955 (E0L18_00955) | - | 179079..179801 (+) | 723 | WP_005720319.1 | phage antirepressor KilAC domain-containing protein | - |
| E0L18_RS12130 | - | 179858..180307 (+) | 450 | WP_255303077.1 | pyruvate kinase | - |
| E0L18_RS00965 (E0L18_00965) | - | 180485..180697 (+) | 213 | WP_071522871.1 | hypothetical protein | - |
| E0L18_RS00970 (E0L18_00970) | - | 180726..181034 (+) | 309 | WP_139616948.1 | helix-turn-helix domain-containing protein | - |
| E0L18_RS00975 (E0L18_00975) | - | 180932..182023 (+) | 1092 | WP_139616949.1 | site-specific integrase | - |
| E0L18_RS00985 (E0L18_00985) | rne | 182291..185311 (-) | 3021 | WP_139616950.1 | ribonuclease E | - |
| E0L18_RS00990 (E0L18_00990) | rluC | 185728..186708 (+) | 981 | WP_139616951.1 | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | - |
| E0L18_RS00995 (E0L18_00995) | cobB | 186786..187490 (+) | 705 | Protein_191 | Sir2 family NAD+-dependent deacetylase | - |
| E0L18_RS01000 (E0L18_01000) | trxA | 187544..187867 (-) | 324 | WP_025248426.1 | thioredoxin | - |
| E0L18_RS01005 (E0L18_01005) | - | 187979..189088 (-) | 1110 | WP_005717198.1 | methionine biosynthesis PLP-dependent protein | - |
| E0L18_RS01025 (E0L18_01025) | - | 189749..190603 (+) | 855 | WP_139616952.1 | ParA family protein | - |
| E0L18_RS01030 (E0L18_01030) | dnaB | 190604..191980 (+) | 1377 | WP_139616953.1 | replicative DNA helicase | - |
| E0L18_RS12135 | - | 191992..192438 (+) | 447 | WP_255303078.1 | ParB N-terminal domain-containing protein | - |
| E0L18_RS01035 (E0L18_01035) | - | 192375..193694 (+) | 1320 | WP_255303189.1 | ParB family protein | - |
| E0L18_RS01040 (E0L18_01040) | - | 193714..194256 (+) | 543 | WP_139616954.1 | DUF2857 domain-containing protein | - |
| E0L18_RS01045 (E0L18_01045) | - | 194344..194994 (+) | 651 | WP_139616955.1 | STY4528 family pathogenicity island replication protein | - |
| E0L18_RS01050 (E0L18_01050) | - | 195080..195577 (+) | 498 | WP_139616956.1 | hypothetical protein | - |
| E0L18_RS01055 (E0L18_01055) | - | 195769..196518 (+) | 750 | WP_139616957.1 | PFL_4669 family integrating conjugative element protein | - |
| E0L18_RS01060 (E0L18_01060) | - | 196557..197054 (+) | 498 | WP_139616958.1 | DUF3158 family protein | - |
| E0L18_RS01065 (E0L18_01065) | ssb | 197335..197742 (+) | 408 | WP_139616959.1 | single-stranded DNA-binding protein | Machinery gene |
| E0L18_RS01070 (E0L18_01070) | - | 197760..198236 (+) | 477 | WP_139616960.1 | hypothetical protein | - |
| E0L18_RS01075 (E0L18_01075) | - | 198784..199497 (-) | 714 | WP_139616961.1 | AAA family ATPase | - |
| E0L18_RS01080 (E0L18_01080) | - | 199848..200813 (+) | 966 | WP_139616962.1 | DUF6685 family protein | - |
| E0L18_RS01085 (E0L18_01085) | - | 200869..201231 (-) | 363 | WP_139616963.1 | hypothetical protein | - |
| E0L18_RS01090 (E0L18_01090) | - | 201240..202622 (-) | 1383 | WP_368659736.1 | integrating conjugative element protein | - |
| E0L18_RS12140 | - | 202562..203212 (-) | 651 | WP_255303081.1 | hypothetical protein | - |
| E0L18_RS01095 (E0L18_01095) | - | 203218..204165 (-) | 948 | WP_139616964.1 | TIGR03756 family integrating conjugative element protein | - |
| E0L18_RS01100 (E0L18_01100) | - | 204162..204599 (-) | 438 | WP_139616965.1 | TIGR03757 family integrating conjugative element protein | - |
| E0L18_RS01105 (E0L18_01105) | - | 204849..205109 (+) | 261 | WP_139616966.1 | antitoxin | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15776.74 Da Isoelectric Point: 8.0053
>NTDB_id=350248 E0L18_RS00930 WP_016569994.1 176146..176574(+) (ssb) [Pasteurella multocida subsp. multocida strain HN01]
MAGVNKVIIVGNLGQNPDYKVMTNGDPVTNISVATSEVWADKASGEKREVVEWHRITIYRRQADIAAQFLKKGSKVYVEG
RLKTRKWQDQSGQERYITEILADKIVLLDSKQSASAGNGSPPPAQQQHDPYGDAFNCDNIPF
MAGVNKVIIVGNLGQNPDYKVMTNGDPVTNISVATSEVWADKASGEKREVVEWHRITIYRRQADIAAQFLKKGSKVYVEG
RLKTRKWQDQSGQERYITEILADKIVLLDSKQSASAGNGSPPPAQQQHDPYGDAFNCDNIPF
Nucleotide
Download Length: 429 bp
>NTDB_id=350248 E0L18_RS00930 WP_016569994.1 176146..176574(+) (ssb) [Pasteurella multocida subsp. multocida strain HN01]
ATGGCTGGAGTAAATAAAGTAATTATTGTTGGCAACTTAGGGCAAAACCCCGATTACAAAGTAATGACAAATGGCGATCC
CGTGACCAACATCAGCGTGGCTACAAGTGAAGTGTGGGCTGATAAAGCAAGCGGTGAAAAGCGCGAAGTTGTCGAGTGGC
ACCGTATTACGATATATCGCAGACAAGCGGACATTGCCGCACAATTTTTGAAAAAAGGTTCTAAAGTCTATGTTGAAGGT
CGTTTAAAAACTCGTAAATGGCAAGATCAAAGCGGACAAGAACGATACATCACAGAAATTCTCGCTGATAAGATCGTCTT
ACTTGATAGCAAGCAGAGTGCGAGTGCTGGCAATGGCAGTCCACCACCAGCACAACAGCAACATGATCCGTATGGTGACG
CATTTAATTGTGACAATATTCCATTCTGA
ATGGCTGGAGTAAATAAAGTAATTATTGTTGGCAACTTAGGGCAAAACCCCGATTACAAAGTAATGACAAATGGCGATCC
CGTGACCAACATCAGCGTGGCTACAAGTGAAGTGTGGGCTGATAAAGCAAGCGGTGAAAAGCGCGAAGTTGTCGAGTGGC
ACCGTATTACGATATATCGCAGACAAGCGGACATTGCCGCACAATTTTTGAAAAAAGGTTCTAAAGTCTATGTTGAAGGT
CGTTTAAAAACTCGTAAATGGCAAGATCAAAGCGGACAAGAACGATACATCACAGAAATTCTCGCTGATAAGATCGTCTT
ACTTGATAGCAAGCAGAGTGCGAGTGCTGGCAATGGCAGTCCACCACCAGCACAACAGCAACATGATCCGTATGGTGACG
CATTTAATTGTGACAATATTCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
67.544 |
80.282 |
0.542 |
| ssb | Neisseria meningitidis MC58 |
42.958 |
100 |
0.43 |
| ssb | Neisseria gonorrhoeae MS11 |
42.958 |
100 |
0.43 |
| ssb | Vibrio cholerae strain A1552 |
59.596 |
69.718 |
0.415 |