Detailed information NTG0350125

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: E1H31_RS03755
• Genome accession: NZ_CP037831
• Coordinates: 782380..783087 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain Cd8
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 777380..788087

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1H31_RS03730 (E1H31_03820)	cdd1	778256..778501 (+)	246	WP_009888450.1	protein Cdd1	-
E1H31_RS03735 (E1H31_03825)	-	778719..778988 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
E1H31_RS03740 (E1H31_03830)	-	779785..780522 (-)	738	WP_003439186.1	ABC transporter permease	-
E1H31_RS03745 (E1H31_03835)	-	780534..781295 (-)	762	WP_003439185.1	ABC transporter permease	-
E1H31_RS03750 (E1H31_03840)	-	781295..782218 (-)	924	WP_025985748.1	ABC transporter ATP-binding protein	-
E1H31_RS03755 (E1H31_03845)	scnR	782380..783087 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
E1H31_RS03760 (E1H31_03850)	-	783132..784538 (+)	1407	WP_021367592.1	sensor histidine kinase	-
E1H31_RS03765 (E1H31_03855)	-	786390..786779 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
E1H31_RS03770 (E1H31_03860)	-	787507..787977 (+)	471	WP_009888463.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=350125 E1H31_RS03755 WP_009888460.1 782380..783087(+) (scnR) [Clostridioides difficile strain Cd8]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=350125 E1H31_RS03755 WP_009888460.1 782380..783087(+) (scnR) [Clostridioides difficile strain Cd8]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGGTTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379