Detailed information NTG0350108

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: E1H32_RS03670
• Genome accession: NZ_CP037830
• Coordinates: 758334..759041 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile strain Cd9
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 753334..764041

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1H32_RS03645 (E1H32_03755)	cdd1	754129..754374 (+)	246	WP_009888450.1	protein Cdd1	-
E1H32_RS03650 (E1H32_03760)	-	754592..754861 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
E1H32_RS03655 (E1H32_03770)	-	755739..756476 (-)	738	WP_003439186.1	ABC transporter permease	-
E1H32_RS03660 (E1H32_03775)	-	756488..757249 (-)	762	WP_009895698.1	ABC transporter permease	-
E1H32_RS03665 (E1H32_03780)	-	757249..758172 (-)	924	WP_025985748.1	ABC transporter ATP-binding protein	-
E1H32_RS03670 (E1H32_03785)	scnR	758334..759041 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
E1H32_RS03675 (E1H32_03790)	-	759086..760492 (+)	1407	WP_021373293.1	sensor histidine kinase	-
E1H32_RS03680 (E1H32_03795)	-	762254..762643 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-
E1H32_RS03685 (E1H32_03800)	-	763513..763983 (+)	471	WP_003439176.1	VOC family protein	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=350108 E1H32_RS03670 WP_009888460.1 758334..759041(+) (scnR) [Clostridioides difficile strain Cd9]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=350108 E1H32_RS03670 WP_009888460.1 758334..759041(+) (scnR) [Clostridioides difficile strain Cd9]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379