Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   GJV39_RS11015 Genome accession   NZ_CP046114
Coordinates   2175088..2176464 (+) Length   458 a.a.
NCBI ID   WP_021110380.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2170088..2181464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS10995 (GJV39_10995) - 2171149..2171817 (-) 669 WP_021110377.1 prepilin peptidase -
  GJV39_RS11000 (GJV39_11000) pilC 2171814..2173010 (-) 1197 WP_021110378.1 type II secretion system F family protein Machinery gene
  GJV39_RS11005 (GJV39_11005) pilB 2173003..2174388 (-) 1386 WP_021110379.1 GspE/PulE family protein Machinery gene
  GJV39_RS11010 (GJV39_11010) pilA 2174436..2174900 (-) 465 WP_005711781.1 pilin Machinery gene
  GJV39_RS11015 (GJV39_11015) radA/sms 2175088..2176464 (+) 1377 WP_021110380.1 DNA repair protein RadA Machinery gene
  GJV39_RS11020 (GJV39_11020) gmk 2176517..2177143 (-) 627 WP_005711785.1 guanylate kinase -
  GJV39_RS11025 (GJV39_11025) - 2177212..2178183 (-) 972 WP_012621529.1 IS110 family transposase -
  GJV39_RS11030 (GJV39_11030) gpt 2178584..2179063 (-) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  GJV39_RS11035 (GJV39_11035) - 2179244..2180698 (+) 1455 WP_021110059.1 aminoacyl-histidine dipeptidase -
  GJV39_RS11040 (GJV39_11040) - 2180742..2181416 (-) 675 WP_005714023.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49462.07 Da        Isoelectric Point: 7.6964

>NTDB_id=350111 GJV39_RS11015 WP_021110380.1 2175088..2176464(+) (radA/sms) [Glaesserella parasuis strain SCW0912]
MAKAPKTAYVCSDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSDIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSAPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=350111 GJV39_RS11015 WP_021110380.1 2175088..2176464(+) (radA/sms) [Glaesserella parasuis strain SCW0912]
ATGGCAAAAGCACCAAAAACCGCTTATGTATGTAGTGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAATGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTTCGACTAATTTCGGCAAAAGAGAGCAAAAGTGACCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGATTGTCTGACATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAACTAGACCGTGTGCTGGGGGGCGGTATTGTACCCGGCAGTGCGATTTTGATCGGCGGACACCCAGGGGCAGGGAAAAG
CACCTTGCTCTTGCAAGTGATGTGCGGTTTGTCGCAAAGTGCGCCAACCCTTTATGTGACTGGAGAAGAGTCGTTACAAC
AGGTGGCAATGCGAGCTAACCGTTTGGGCTTGCCGACTGATAATCTGAAAATGTTATCTGAAACTTCGGTCGAACATATT
TGTAATCTTGCCGATCAGGAAAAACCAAAGCTGATGGTGATTGACTCTATTCAAGTGATGCACCTTGCGGATATTCAATC
TTCCCCGGGTAGTGTGGCTCAGGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGCCAAGTGGCGATTA
TTATGGTTGGTCACGTAACAAAAGATGGAACTTTAGCAGGCCCTAAAGTGTTAGAACACGCCATTGACGCTTCGTTGTTA
TTGGAAGGGGAGGCGGACTCTCGTTATCGTACCTTACGCAGCCAGAAAAACCGTTTTGGTGCAGTGAACGAACTGGGTGT
ATTTGCAATGACAGAGCAGGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTTTTAAGCCGTAGTGAAGAACAGACTT
CAGGCAGCTCGGTGATGGTATTGTGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAGGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCGCTGTTACTTGCGGTGCTACATCGACACGG
TGGCTTGCAAATGTCTGATCAAGATGTGTTTGTGAATGTGGTCGGTGGGGTAAAAGTCACGGAAACCAGTGCCGACCTAG
CTTTATTGCTGGCATTAATTTCGAGCTTTCGCAACCGTCCTTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTGGGTTTA
GCAGGGGAAATTCGTCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCAGCAAAACACGGCTTTAAACGCGCGATCAT
TCCTCACGGCAACGCTCCGAAAAAAGCAATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.592

98.908

0.441
  radA Streptococcus mitis SK321

44.371

98.908

0.439
  radA Streptococcus pneumoniae Rx1

45.688

93.668

0.428
  radA Streptococcus pneumoniae D39

45.688

93.668

0.428
  radA Streptococcus pneumoniae R6

45.688

93.668

0.428
  radA Streptococcus pneumoniae TIGR4

45.688

93.668

0.428