Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GJV39_RS10985 Genome accession   NZ_CP046114
Coordinates   2168608..2169858 (+) Length   416 a.a.
NCBI ID   WP_021110376.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SCW0912     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2163608..2174858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS10960 (GJV39_10960) - 2164688..2165659 (+) 972 WP_012621529.1 IS110 family transposase -
  GJV39_RS10965 (GJV39_10965) - 2165699..2166316 (-) 618 WP_021110373.1 L-threonylcarbamoyladenylate synthase -
  GJV39_RS12355 - 2166804..2167100 (+) 297 WP_230205900.1 anion permease -
  GJV39_RS12360 - 2167078..2167452 (+) 375 WP_075592870.1 SLC13 family permease -
  GJV39_RS10975 (GJV39_10975) - 2167530..2167919 (-) 390 WP_005711765.1 SufE family protein -
  GJV39_RS10980 (GJV39_10980) clpP 2168020..2168601 (+) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  GJV39_RS10985 (GJV39_10985) clpX 2168608..2169858 (+) 1251 WP_021110376.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  GJV39_RS10990 (GJV39_10990) dapE 2169932..2171065 (-) 1134 WP_005711772.1 succinyl-diaminopimelate desuccinylase -
  GJV39_RS10995 (GJV39_10995) - 2171149..2171817 (-) 669 WP_021110377.1 prepilin peptidase -
  GJV39_RS11000 (GJV39_11000) pilC 2171814..2173010 (-) 1197 WP_021110378.1 type II secretion system F family protein Machinery gene
  GJV39_RS11005 (GJV39_11005) pilB 2173003..2174388 (-) 1386 WP_021110379.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45863.50 Da        Isoelectric Point: 5.1845

>NTDB_id=350107 GJV39_RS10985 WP_021110376.1 2168608..2169858(+) (clpX) [Glaesserella parasuis strain SCW0912]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIDESYTLINGTDEPLIDENEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHYKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKDRQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVSKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=350107 GJV39_RS10985 WP_021110376.1 2168608..2169858(+) (clpX) [Glaesserella parasuis strain SCW0912]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGCGGGAAGCGTCGTAATGAAGTCGATGCATTAATTGAAGGTAC
AGAAGGGCATATTTGTAACGAATGTATTGATGAGTCTTATACGTTAATTAATGGAACAGACGAACCATTGATTGATGAAA
ATGAAGCTGAGAGCCAAGATGTGTTAGGCAATGTGCCTACCCCACACGAAATTCACGCACATTTAGATGATTATGTGATC
GGTCAAGAACACGCTAAAAAGGTATTGTCCGTTGCGGTCTATAACCACTACAAACGCTTACGCAATGCACTGTCTGACAA
TAAAGAGAGTGAGGGCGTTGAGTTAGGTAAAAGTAACATTTTGCTTATCGGCCCGACAGGAAGTGGTAAAACATTGTTGG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACGCTGACGCAAGCAGGCTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCCGGTGAAGGGGTTCAGC
AAGCGTTGCTGAAATTGATTGAAGGCACTATTGCGAATATCAATCCACAGGGTGGACGCAAACACCCGAAACAAGAAACA
ATTCCAGTCGATACGTCTAAAATTCTCTTTATCTGCGGTGGTGCATTTGCTGGGCTAGATAAAATTGTCGAAGCTCGAAC
AAATACACAAGGCGGAATTGGCTTTAAAGCGGAATTGAAGAAAGATAAAGATCGTCAGGCACTCACTGAATTATTCAAAC
AAGTTGAGCCTGAAGATTTGGTAAAATTTGGTTTAATTCCCGAGTTAATCGGGCGTTTGCCTGTGATCACACCGCTTGAA
GAACTTGATGAAAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCCTTATTCAA
AATGGAAGGTGTGGAGTTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGCAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGTTACTCGACACGATGTATGATTTACCATCATTGAAAGCAAGTAAAGTG
ACAGTGAGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.235

98.317

0.553
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.523

98.317

0.536

Multiple sequence alignment