Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E0Z06_RS15240 Genome accession   NZ_CP037745
Coordinates   3237873..3238484 (-) Length   203 a.a.
NCBI ID   WP_132586492.1    Uniprot ID   -
Organism   Rheinheimera sp. D18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3232873..3243484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0Z06_RS15230 (E0Z06_15230) - 3234775..3236376 (-) 1602 WP_132586486.1 site-specific integrase -
  E0Z06_RS15235 (E0Z06_15235) - 3236366..3237709 (-) 1344 WP_132586489.1 site-specific integrase -
  E0Z06_RS15240 (E0Z06_15240) ssb 3237873..3238484 (-) 612 WP_132586492.1 single-stranded DNA-binding protein Machinery gene
  E0Z06_RS15245 (E0Z06_15245) - 3238505..3239869 (-) 1365 WP_132586495.1 MFS transporter -
  E0Z06_RS15250 (E0Z06_15250) uvrA 3240094..3242916 (+) 2823 WP_132586498.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22403.83 Da        Isoelectric Point: 5.9614

>NTDB_id=349851 E0Z06_RS15240 WP_132586492.1 3237873..3238484(-) (ssb) [Rheinheimera sp. D18]
MARGINKVILIGNLGTDPEVRYMPQGGAVANLTVATSESWTDKASNEKKEQTEWHRVVIYQRLAEIAGEYLRKGSKVYIE
GKLKTRKWQDKDGVERYTTEIIANELQMLDGRGDNQQQGGMGGGQQGGFQKAAPQQQGGYQQAPQQGGFQPQSGGYQQAA
PQQQGGFQPQRPAAQPQQGYQQPAQPQRAPMEPPIDFDDDIPF

Nucleotide


Download         Length: 612 bp        

>NTDB_id=349851 E0Z06_RS15240 WP_132586492.1 3237873..3238484(-) (ssb) [Rheinheimera sp. D18]
ATGGCGCGTGGCATTAATAAAGTTATTTTGATTGGTAATCTGGGCACTGATCCAGAAGTGCGTTATATGCCACAAGGCGG
TGCAGTAGCTAATTTAACCGTAGCCACCTCAGAAAGCTGGACTGATAAAGCTAGCAATGAAAAGAAAGAACAAACTGAAT
GGCATCGGGTGGTAATTTACCAACGTTTAGCCGAAATTGCCGGTGAATACCTGCGTAAAGGCAGCAAAGTTTATATTGAA
GGAAAGCTGAAAACCCGTAAGTGGCAAGATAAAGATGGTGTAGAGCGTTACACCACAGAGATTATTGCCAATGAGCTACA
GATGTTAGACGGCCGTGGTGACAACCAGCAACAAGGCGGTATGGGCGGCGGCCAGCAAGGTGGCTTCCAAAAAGCCGCAC
CACAACAGCAAGGCGGTTATCAGCAGGCACCACAACAAGGTGGCTTTCAACCGCAAAGCGGTGGTTACCAACAAGCTGCA
CCACAGCAGCAAGGCGGCTTTCAGCCACAACGCCCAGCAGCTCAACCACAACAGGGTTACCAGCAACCAGCACAGCCACA
ACGCGCGCCAATGGAACCGCCAATCGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.502

100

0.566
  ssb Glaesserella parasuis strain SC1401

53.202

100

0.532
  ssb Neisseria meningitidis MC58

46.231

98.03

0.453
  ssb Neisseria gonorrhoeae MS11

46.231

98.03

0.453

Multiple sequence alignment