Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EC80_RS11645 | Genome accession | NZ_CP036546 |
| Coordinates | 2714587..2715045 (+) | Length | 152 a.a. |
| NCBI ID | WP_005776338.1 | Uniprot ID | A0A4Q0U428 |
| Organism | Bacteroides fragilis strain DCMSKEJBY0001B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2675979..2715045 | 2714587..2715045 | within | 0 |
Gene organization within MGE regions
Location: 2675979..2715045
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC80_RS11445 (EC80_011450) | - | 2675979..2676968 (+) | 990 | WP_032536891.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| EC80_RS11450 (EC80_011455) | - | 2677487..2677805 (-) | 319 | Protein_2121 | AAA family ATPase | - |
| EC80_RS24255 (EC80_011460) | - | 2678097..2678308 (+) | 212 | Protein_2122 | transcriptional regulator | - |
| EC80_RS11460 (EC80_011465) | hsdR | 2678322..2680637 (+) | 2316 | WP_032536873.1 | EcoAI/FtnUII family type I restriction enzme subunit R | - |
| EC80_RS11465 (EC80_011470) | - | 2680640..2682160 (+) | 1521 | WP_010992487.1 | class I SAM-dependent DNA methyltransferase | - |
| EC80_RS11470 (EC80_011475) | - | 2682176..2683192 (+) | 1017 | WP_010992488.1 | hypothetical protein | - |
| EC80_RS11475 (EC80_011480) | - | 2683185..2683631 (+) | 447 | WP_010992489.1 | Fic family protein | - |
| EC80_RS11480 (EC80_011485) | - | 2683658..2685229 (+) | 1572 | WP_032536872.1 | restriction endonuclease subunit S | - |
| EC80_RS11485 (EC80_011490) | - | 2685209..2685808 (-) | 600 | WP_316932209.1 | restriction endonuclease subunit S | - |
| EC80_RS11490 (EC80_011495) | - | 2685867..2686673 (+) | 807 | WP_032536871.1 | tyrosine-type recombinase/integrase | - |
| EC80_RS11495 (EC80_011500) | - | 2687141..2688055 (-) | 915 | WP_032536870.1 | DUF4373 domain-containing protein | - |
| EC80_RS11500 (EC80_011505) | - | 2688207..2688554 (-) | 348 | WP_032531282.1 | SH3 beta-barrel fold-containing protein | - |
| EC80_RS11510 (EC80_011515) | upfY | 2689640..2690200 (+) | 561 | WP_080714591.1 | capsular polysaccharide transcription antiterminator UpfY | - |
| EC80_RS11515 (EC80_011520) | - | 2690212..2690694 (+) | 483 | WP_032536868.1 | UpxZ family transcription anti-terminator antagonist | - |
| EC80_RS11520 (EC80_011525) | rfbA | 2690731..2691621 (+) | 891 | WP_032536889.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| EC80_RS11525 (EC80_011530) | rfbC | 2691621..2692196 (+) | 576 | WP_022011491.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| EC80_RS11530 (EC80_011535) | - | 2692217..2692606 (+) | 390 | WP_008659260.1 | hypothetical protein | - |
| EC80_RS11535 (EC80_011540) | - | 2692626..2693942 (+) | 1317 | WP_022011492.1 | UDP-glucose/GDP-mannose dehydrogenase family protein | - |
| EC80_RS11540 (EC80_011545) | - | 2693952..2694887 (+) | 936 | WP_022011493.1 | UDP-glucuronic acid decarboxylase family protein | - |
| EC80_RS11545 (EC80_011550) | - | 2695903..2697336 (+) | 1434 | WP_022011496.1 | lipopolysaccharide biosynthesis protein | - |
| EC80_RS11550 (EC80_011555) | - | 2697341..2698273 (+) | 933 | WP_022011497.1 | glycosyltransferase family 8 protein | - |
| EC80_RS11555 (EC80_011560) | - | 2698261..2699121 (+) | 861 | WP_022011498.1 | alpha-1,2-fucosyltransferase | - |
| EC80_RS11560 (EC80_011565) | - | 2699138..2699899 (+) | 762 | WP_032536605.1 | hypothetical protein | - |
| EC80_RS11565 (EC80_011570) | - | 2700071..2701087 (+) | 1017 | WP_032536603.1 | glycosyltransferase family 10 | - |
| EC80_RS11570 (EC80_011575) | - | 2701084..2702151 (+) | 1068 | WP_234072637.1 | glycosyltransferase family 2 protein | - |
| EC80_RS11575 (EC80_011580) | - | 2702167..2702886 (+) | 720 | WP_022011502.1 | glycosyltransferase family 32 protein | - |
| EC80_RS11580 (EC80_011585) | - | 2702891..2703946 (+) | 1056 | WP_022011503.1 | EpsG family protein | - |
| EC80_RS11585 (EC80_011590) | - | 2703946..2705001 (+) | 1056 | WP_234072636.1 | glycosyltransferase family 4 protein | - |
| EC80_RS11590 (EC80_011595) | - | 2705014..2705838 (+) | 825 | WP_022011505.1 | glycosyltransferase family 2 protein | - |
| EC80_RS11595 (EC80_011600) | - | 2705847..2706743 (+) | 897 | WP_032536359.1 | NAD(P)-dependent oxidoreductase | - |
| EC80_RS11600 (EC80_011605) | - | 2706859..2707809 (+) | 951 | WP_032536345.1 | glycosyltransferase family 4 protein | - |
| EC80_RS11605 (EC80_011610) | - | 2707812..2708399 (+) | 588 | WP_032536344.1 | N-acetylmuramidase family protein | - |
| EC80_RS11610 (EC80_011615) | - | 2708584..2708799 (+) | 216 | WP_032536343.1 | helix-turn-helix transcriptional regulator | - |
| EC80_RS11615 (EC80_011620) | - | 2708796..2709122 (+) | 327 | WP_032536342.1 | HipA N-terminal domain-containing protein | - |
| EC80_RS11620 (EC80_011625) | - | 2709124..2709459 (+) | 336 | WP_032536341.1 | HipA domain-containing protein | - |
| EC80_RS11625 (EC80_011630) | - | 2709507..2711081 (-) | 1575 | WP_032531836.1 | Rne/Rng family ribonuclease | - |
| EC80_RS11630 (EC80_011635) | - | 2711361..2711636 (-) | 276 | WP_005776335.1 | HU family DNA-binding protein | - |
| EC80_RS11635 (EC80_011640) | mutY | 2711841..2712887 (+) | 1047 | WP_032536340.1 | A/G-specific adenine glycosylase | - |
| EC80_RS11640 (EC80_011645) | - | 2712931..2714499 (+) | 1569 | WP_022013012.1 | arylsulfatase | - |
| EC80_RS11645 (EC80_011650) | ssb | 2714587..2715045 (+) | 459 | WP_005776338.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16725.68 Da Isoelectric Point: 5.7512
>NTDB_id=349553 EC80_RS11645 WP_005776338.1 2714587..2715045(+) (ssb) [Bacteroides fragilis strain DCMSKEJBY0001B]
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=349553 EC80_RS11645 WP_005776338.1 2714587..2715045(+) (ssb) [Bacteroides fragilis strain DCMSKEJBY0001B]
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGAACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGAACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.573 |
100 |
0.487 |
| ssb | Neisseria meningitidis MC58 |
39.205 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
39.205 |
100 |
0.454 |
| ssb | Glaesserella parasuis strain SC1401 |
37.079 |
100 |
0.434 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
32.37 |
100 |
0.368 |