Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   GJD96_RS10820 Genome accession   NZ_CP046009
Coordinates   1915981..1916637 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain 1919D62     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1910981..1921637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD96_RS10790 (GJD96_10805) dcyD 1911860..1912846 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  GJD96_RS10795 (GJD96_10810) tcyL 1912861..1913529 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  GJD96_RS10800 (GJD96_10815) tcyN 1913526..1914278 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  GJD96_RS10805 (GJD96_10820) sdiA 1914508..1915230 (+) 723 WP_063078868.1 transcriptional regulator SdiA -
  GJD96_RS10810 (GJD96_10825) yecF 1915298..1915522 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  GJD96_RS10815 (GJD96_10830) yecU 1915509..1915685 (-) 177 WP_000590344.1 protein YecU -
  GJD96_RS24450 - 1915723..1915839 (-) 117 WP_001302039.1 hypothetical protein -
  GJD96_RS10820 (GJD96_10835) letA 1915981..1916637 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  GJD96_RS10825 (GJD96_10840) uvrC 1916634..1918466 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  GJD96_RS10830 (GJD96_10845) pgsA 1918523..1919071 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GJD96_RS10850 (GJD96_10865) yecA 1919720..1920385 (+) 666 WP_000847882.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=349537 GJD96_RS10820 WP_000611328.1 1915981..1916637(+) (letA) [Escherichia coli strain 1919D62]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=349537 GJD96_RS10820 WP_000611328.1 1915981..1916637(+) (letA) [Escherichia coli strain 1919D62]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGTCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482

Multiple sequence alignment