Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | EC81_RS12145 | Genome accession | NZ_CP036539 |
| Coordinates | 2801337..2801795 (+) | Length | 152 a.a. |
| NCBI ID | WP_005776338.1 | Uniprot ID | A0A4Q0U428 |
| Organism | Bacteroides fragilis strain DCMOUH0017B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2796337..2806795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EC81_RS12130 (EC81_012135) | - | 2798111..2798386 (-) | 276 | WP_005776335.1 | HU family DNA-binding protein | - |
| EC81_RS12135 (EC81_012140) | mutY | 2798591..2799637 (+) | 1047 | WP_032543805.1 | A/G-specific adenine glycosylase | - |
| EC81_RS12140 (EC81_012145) | - | 2799681..2801249 (+) | 1569 | WP_032543804.1 | arylsulfatase | - |
| EC81_RS12145 (EC81_012150) | ssb | 2801337..2801795 (+) | 459 | WP_005776338.1 | single-stranded DNA-binding protein | Machinery gene |
| EC81_RS12150 (EC81_012155) | - | 2801931..2803277 (+) | 1347 | WP_022013013.1 | gliding motility-associated protein GldE | - |
| EC81_RS12155 (EC81_012160) | - | 2803285..2803935 (+) | 651 | WP_022013014.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| EC81_RS24765 | - | 2803956..2806262 (+) | 2307 | WP_032543819.1 | hypothetical protein | - |
| EC81_RS12165 (EC81_012170) | - | 2806345..2806560 (-) | 216 | WP_005776344.1 | (4Fe-4S)-binding protein | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16725.68 Da Isoelectric Point: 5.7512
>NTDB_id=349537 EC81_RS12145 WP_005776338.1 2801337..2801795(+) (ssb) [Bacteroides fragilis strain DCMOUH0017B]
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF
MSVNKVILIGNVGKDPEVRYLDTGIAVASFPLATTDRAYTLSNGTQVPERTEWHNLVLWRGLAETAEKYVHKGDKLYVEG
KIRTRSYDDQSGAKRYVTEIFVDNMEMLTPKGAGAGSYAPSQQQAAAPVRPQPQQPQQSASSQDNPADDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=349537 EC81_RS12145 WP_005776338.1 2801337..2801795(+) (ssb) [Bacteroides fragilis strain DCMOUH0017B]
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA
ATGTCAGTAAATAAAGTGATATTGATAGGAAATGTCGGTAAAGACCCTGAAGTGAGATATTTGGATACGGGTATTGCTGT
GGCCAGTTTTCCTTTGGCTACAACCGACCGTGCATATACTTTGTCTAATGGTACACAAGTGCCTGAGCGGACTGAATGGC
ACAATCTTGTACTTTGGCGAGGACTGGCAGAAACTGCCGAGAAATATGTACATAAAGGTGATAAGCTCTATGTGGAAGGT
AAGATAAGAACTCGTTCTTATGATGACCAGAGTGGGGCAAAACGCTATGTTACCGAGATATTTGTAGATAATATGGAAAT
GCTGACTCCGAAAGGTGCCGGTGCCGGATCGTATGCTCCGTCACAGCAGCAGGCTGCTGCTCCCGTACGGCCTCAACCGC
AACAACCGCAGCAATCGGCATCTTCACAAGATAATCCGGCAGACGATCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.573 |
100 |
0.487 |
| ssb | Neisseria meningitidis MC58 |
39.205 |
100 |
0.454 |
| ssb | Neisseria gonorrhoeae MS11 |
39.205 |
100 |
0.454 |
| ssb | Glaesserella parasuis strain SC1401 |
37.079 |
100 |
0.434 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
32.37 |
100 |
0.368 |