Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EZV72_RS18075 Genome accession   NZ_CP036536
Coordinates   4066451..4067971 (+) Length   506 a.a.
NCBI ID   WP_137168545.1    Uniprot ID   -
Organism   Salinimonas lutimaris strain DPSR-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4061451..4072971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV72_RS18060 ilvD 4062507..4064354 (-) 1848 WP_137168542.1 dihydroxy-acid dehydratase -
  EZV72_RS18065 - 4064377..4065309 (-) 933 WP_137168543.1 branched-chain amino acid transaminase -
  EZV72_RS18070 - 4065768..4066382 (+) 615 WP_137168544.1 trimeric intracellular cation channel family protein -
  EZV72_RS18075 comM 4066451..4067971 (+) 1521 WP_137168545.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EZV72_RS18080 ilvY 4067953..4068816 (-) 864 WP_137168546.1 HTH-type transcriptional activator IlvY -
  EZV72_RS18085 ilvC 4068971..4070452 (+) 1482 WP_137168547.1 ketol-acid reductoisomerase -
  EZV72_RS18090 - 4070614..4071495 (+) 882 WP_137168548.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  EZV72_RS18095 - 4071492..4072745 (-) 1254 WP_137168549.1 multidrug effflux MFS transporter -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54660.50 Da        Isoelectric Point: 7.0910

>NTDB_id=349522 EZV72_RS18075 WP_137168545.1 4066451..4067971(+) (comM) [Salinimonas lutimaris strain DPSR-4]
MGYAVLRTRAAEGIDAPPVQVEVHLSNGLPRFDLVGMAETSVKEARDRVRSALINSGFEFPARRITVNLAPATVPKAGSR
YDLPIAVGILAAAGMLDERALAQTELIGELGLDGTLKAITGLVPALLAIRNETDSSVIFPAACVPEGTLVDGIERYPALS
LLHVFHHFSGTEKLQALAEQAHHCAPRQVPRWDDIIGQQPAKRALLIAASGAHNLLFVGPPGTGKSLLASRLLSLLPELS
IEEALEVAAVHSVKGLTVEAQTLFSRPFRAPHHTCSPVALTGGGSNPMPGEVSLAHHGILFLDELPEYGRRNLDVLREPL
ENGHICISRAQGQATYPARFQLIAAMNPSPTGDVHDGRCSPDEILRYINRLSGPLLDRIDMQVDVPRLPDYTLSAAVTDS
HQDSAQEAKTRVSEARRVQWQRQGKLNNQLQAGELAEACQLSARDLAFAQRAAAQLKLSMRVFHRSLKVARTLADLDASV
QVGRSHLSEAMQYRALDRLIGQLSSS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=349522 EZV72_RS18075 WP_137168545.1 4066451..4067971(+) (comM) [Salinimonas lutimaris strain DPSR-4]
ATGGGGTATGCAGTATTACGCACCCGGGCCGCCGAGGGCATTGATGCCCCGCCGGTACAGGTCGAGGTGCATCTGTCTAA
CGGACTACCCAGGTTTGACCTGGTTGGCATGGCAGAAACCAGTGTAAAGGAAGCCCGGGACCGGGTACGCAGCGCACTGA
TTAACAGTGGCTTTGAGTTTCCCGCCCGGCGTATTACTGTCAATCTGGCTCCGGCCACGGTCCCCAAAGCCGGCAGCCGG
TATGACTTGCCTATTGCAGTGGGAATTCTGGCCGCTGCCGGCATGCTGGATGAACGGGCACTGGCGCAAACCGAGCTGAT
TGGCGAGCTGGGGCTGGATGGCACACTAAAAGCGATTACCGGACTGGTTCCGGCACTGCTTGCCATTCGTAACGAGACTG
ACAGCAGCGTGATCTTTCCCGCCGCCTGTGTGCCCGAAGGCACCCTGGTTGATGGTATTGAACGATACCCCGCCCTGTCC
CTGTTACATGTTTTTCATCATTTTTCCGGAACGGAAAAACTCCAGGCACTGGCCGAGCAGGCCCACCACTGCGCACCGCG
CCAGGTGCCACGATGGGATGACATTATCGGGCAGCAGCCGGCTAAGCGGGCGCTGCTGATAGCCGCCAGTGGAGCGCATA
ATTTACTGTTTGTCGGGCCCCCGGGCACGGGTAAAAGTCTGCTGGCCAGTCGTTTACTCAGCCTGCTGCCAGAATTGAGT
ATCGAAGAGGCCCTGGAGGTCGCCGCGGTACACTCGGTAAAAGGGCTGACCGTTGAAGCGCAAACCCTGTTCAGCCGACC
GTTTCGCGCCCCACACCATACCTGCTCACCGGTGGCCCTGACCGGCGGCGGCAGCAACCCGATGCCCGGCGAAGTATCGC
TGGCCCACCACGGTATTTTATTTTTAGATGAGCTGCCTGAATACGGCCGGCGCAATCTTGATGTACTGCGCGAGCCTCTG
GAAAACGGCCATATCTGCATCAGCCGGGCACAGGGGCAGGCCACCTATCCAGCCCGCTTTCAGCTCATCGCGGCGATGAA
CCCCAGCCCCACCGGAGATGTTCATGACGGACGCTGCTCCCCGGATGAAATACTGCGTTACATCAACCGGCTATCGGGTC
CGTTACTGGATCGCATCGACATGCAGGTAGACGTTCCCCGGTTACCTGACTATACGCTCAGTGCCGCGGTCACCGACTCC
CATCAGGACAGCGCGCAGGAGGCCAAAACCCGGGTCAGTGAAGCCCGCCGCGTGCAGTGGCAGCGTCAGGGTAAGCTGAA
TAACCAGCTACAGGCTGGCGAACTGGCCGAAGCCTGTCAGCTAAGCGCGCGCGATCTGGCGTTTGCTCAGCGTGCCGCCG
CTCAGCTTAAGCTTTCCATGCGGGTGTTTCACCGCAGCCTGAAAGTAGCGCGTACGCTGGCCGATCTGGATGCCAGTGTG
CAGGTCGGGCGCAGCCACTTAAGCGAAGCCATGCAGTACCGGGCACTGGACAGGCTGATTGGTCAGCTGAGCTCCAGCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.969

100

0.522
  comM Glaesserella parasuis strain SC1401

51.181

100

0.514
  comM Vibrio campbellii strain DS40M4

51.085

100

0.512
  comM Haemophilus influenzae Rd KW20

49.414

100

0.5
  comM Legionella pneumophila str. Paris

47.791

98.419

0.47
  comM Legionella pneumophila strain ERS1305867

47.791

98.419

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

40.719

99.012

0.403

Multiple sequence alignment