Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EZV72_RS01510 Genome accession   NZ_CP036536
Coordinates   347979..348551 (+) Length   190 a.a.
NCBI ID   WP_137165569.1    Uniprot ID   -
Organism   Salinimonas lutimaris strain DPSR-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 314947..347906 347979..348551 flank 73


Gene organization within MGE regions


Location: 314947..348551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV72_RS01360 - 314947..315300 (-) 354 WP_137165548.1 MbcA/ParS/Xre antitoxin family protein -
  EZV72_RS01365 abiEi 315461..316009 (-) 549 WP_137165549.1 type IV toxin-antitoxin system AbiEi family antitoxin -
  EZV72_RS01370 - 316123..316581 (+) 459 WP_137165550.1 hypothetical protein -
  EZV72_RS01375 - 316878..317831 (-) 954 WP_137165551.1 DUF4350 domain-containing protein -
  EZV72_RS01380 - 318120..318875 (-) 756 WP_137165552.1 hypothetical protein -
  EZV72_RS01385 - 318868..319128 (-) 261 WP_137165553.1 hypothetical protein -
  EZV72_RS01390 - 319480..320091 (-) 612 WP_137165554.1 tyrosine-type recombinase/integrase -
  EZV72_RS01395 - 320274..321023 (-) 750 WP_137165555.1 hypothetical protein -
  EZV72_RS01400 - 321113..321895 (-) 783 WP_137165556.1 hypothetical protein -
  EZV72_RS18785 - 322165..322395 (+) 231 Protein_270 site-specific integrase -
  EZV72_RS01405 - 322405..323001 (+) 597 WP_137168619.1 tyrosine-type recombinase/integrase -
  EZV72_RS01410 - 323105..323476 (+) 372 WP_137165557.1 hypothetical protein -
  EZV72_RS01415 - 323524..324819 (+) 1296 WP_137165558.1 TolC family protein -
  EZV72_RS01420 - 324812..325993 (+) 1182 WP_137165559.1 efflux RND transporter periplasmic adaptor subunit -
  EZV72_RS01425 - 326007..329117 (+) 3111 WP_137165560.1 efflux RND transporter permease subunit -
  EZV72_RS01430 - 329162..330031 (+) 870 WP_137165561.1 cation diffusion facilitator family transporter -
  EZV72_RS01435 - 331457..332449 (+) 993 WP_137165562.1 nucleotidyltransferase -
  EZV72_RS01440 - 332449..333396 (+) 948 WP_061093931.1 S-4TM family putative pore-forming effector -
  EZV72_RS01445 cadR 333720..334109 (-) 390 WP_015065929.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  EZV72_RS01450 - 334189..334806 (+) 618 WP_137168620.1 cation transporter -
  EZV72_RS01460 - 335261..336595 (+) 1335 WP_137165563.1 TolC family protein -
  EZV72_RS01465 - 336595..337530 (+) 936 WP_061093929.1 efflux RND transporter periplasmic adaptor subunit -
  EZV72_RS01470 - 337591..340701 (+) 3111 WP_137165564.1 efflux RND transporter permease subunit -
  EZV72_RS01475 - 340913..341128 (-) 216 WP_061093927.1 hypothetical protein -
  EZV72_RS01480 - 341131..341454 (-) 324 WP_061093926.1 hypothetical protein -
  EZV72_RS01485 - 342334..342474 (+) 141 WP_217495171.1 hypothetical protein -
  EZV72_RS01490 - 342563..343693 (+) 1131 WP_137165565.1 site-specific integrase -
  EZV72_RS01495 - 343693..345528 (+) 1836 WP_137165566.1 hypothetical protein -
  EZV72_RS01500 - 345533..347299 (+) 1767 WP_137165567.1 site-specific integrase -
  EZV72_RS01505 - 347301..347906 (+) 606 WP_137165568.1 hypothetical protein -
  EZV72_RS01510 ssb 347979..348551 (+) 573 WP_137165569.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21090.01 Da        Isoelectric Point: 5.2707

>NTDB_id=349509 EZV72_RS01510 WP_137165569.1 347979..348551(+) (ssb) [Salinimonas lutimaris strain DPSR-4]
MNRGINKVILVGNLGTDPEVRYMPNGNAVANLSLATSESWKDQQGQLQERTEWHRLTMYRRLAEVAGEYLKKGSQIYVEG
KLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRNEGGNQGGGAPRQQQGGGQGNYGNNQGGGFNQNQGGGYQQQQRPPQQNQ
NMGNQGGNQQGGQKPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=349509 EZV72_RS01510 WP_137165569.1 347979..348551(+) (ssb) [Salinimonas lutimaris strain DPSR-4]
ATGAATCGCGGTATTAATAAAGTCATCCTGGTGGGAAACCTTGGTACCGATCCAGAAGTAAGATACATGCCTAACGGTAA
CGCCGTAGCAAACCTGAGCCTGGCCACCAGTGAGAGTTGGAAGGACCAGCAGGGTCAGCTGCAGGAGCGCACAGAATGGC
ACCGTCTGACTATGTATCGTCGTCTGGCGGAAGTAGCCGGTGAGTACCTGAAAAAAGGCTCACAGATCTATGTAGAAGGT
AAACTGCAGACCCGCAAATGGCAGGATCAGCAAGGCCAGGATCGCTACACCACAGAAATCATTGTTGACCAGATGCAAAT
GCTGGGTGGCCGTAATGAAGGCGGCAACCAGGGCGGTGGTGCCCCGCGCCAGCAGCAAGGTGGTGGTCAGGGTAACTACG
GCAACAACCAGGGTGGCGGTTTCAACCAGAACCAGGGCGGTGGTTATCAGCAACAACAGCGCCCGCCGCAGCAGAATCAG
AACATGGGTAATCAGGGTGGCAACCAGCAAGGTGGCCAGAAGCCGCCAATGGCTGAACCTGATTTTGACTTTGACGACGA
TATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.41

100

0.579
  ssb Glaesserella parasuis strain SC1401

54.082

100

0.558
  ssb Neisseria meningitidis MC58

47.423

100

0.484
  ssb Neisseria gonorrhoeae MS11

47.423

100

0.484

Multiple sequence alignment