Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | EZZ25_RS08815 | Genome accession | NZ_CP036499 |
| Coordinates | 1827909..1828220 (+) | Length | 103 a.a. |
| NCBI ID | WP_001166105.1 | Uniprot ID | Q9KQT1 |
| Organism | Vibrio cholerae strain 20000 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1822909..1833220
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EZZ25_RS08800 (EZZ25_08800) | lon | 1822946..1825306 (+) | 2361 | WP_001047611.1 | endopeptidase La | - |
| EZZ25_RS08805 (EZZ25_08805) | - | 1825490..1825762 (+) | 273 | WP_001044516.1 | HU family DNA-binding protein | - |
| EZZ25_RS08810 (EZZ25_08810) | ppiD | 1825915..1827774 (+) | 1860 | WP_002053088.1 | peptidylprolyl isomerase | - |
| EZZ25_RS08815 (EZZ25_08815) | comEA | 1827909..1828220 (+) | 312 | WP_001166105.1 | ComEA family DNA-binding protein | Machinery gene |
| EZZ25_RS08820 (EZZ25_08820) | cmk | 1828403..1829080 (+) | 678 | WP_000094752.1 | (d)CMP kinase | - |
| EZZ25_RS08825 (EZZ25_08825) | rpsA | 1829189..1830859 (+) | 1671 | WP_000140318.1 | 30S ribosomal protein S1 | - |
| EZZ25_RS08830 (EZZ25_08830) | ihfB | 1831148..1831426 (+) | 279 | WP_000167341.1 | integration host factor subunit beta | - |
| EZZ25_RS08835 (EZZ25_08835) | - | 1831565..1831846 (+) | 282 | WP_000691492.1 | LapA family protein | - |
| EZZ25_RS08840 (EZZ25_08840) | lapB | 1831858..1833027 (+) | 1170 | WP_000889971.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 10966.78 Da Isoelectric Point: 5.0506
>NTDB_id=349236 EZZ25_RS08815 WP_001166105.1 1827909..1828220(+) (comEA) [Vibrio cholerae strain 20000]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL
Nucleotide
Download Length: 312 bp
>NTDB_id=349236 EZZ25_RS08815 WP_001166105.1 1827909..1828220(+) (comEA) [Vibrio cholerae strain 20000]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCCCCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
100 |
100 |
1 |
| comEA | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
62.766 |
91.262 |
0.573 |
| comEA | Vibrio campbellii strain DS40M4 |
58.333 |
93.204 |
0.544 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
40.541 |
100 |
0.437 |