Detailed information NTG0349141

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EZZ81_RS04780
• Genome accession: NZ_CP036495
• Coordinates: 1002661..1003533 (-)
• Length: 290 a.a.
• NCBI ID: WP_029243834.1
• Uniprot ID: A0AA46VV18
• Organism: Pseudomonas viridiflava strain Psy35
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 997661..1008533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZZ81_RS04745 (EZZ81_04835)	-	998160..999458 (-)	1299	WP_029243831.1	NAD(P)/FAD-dependent oxidoreductase	-
EZZ81_RS04750 (EZZ81_04840)	-	999522..999695 (-)	174	WP_004884089.1	DUF3094 family protein	-
EZZ81_RS04755 (EZZ81_04845)	-	999709..1000254 (-)	546	WP_029243832.1	MOSC domain-containing protein	-
EZZ81_RS04760 (EZZ81_04850)	-	1000251..1000880 (-)	630	WP_004884092.1	DUF1780 domain-containing protein	-
EZZ81_RS04765 (EZZ81_04855)	-	1001005..1001466 (+)	462	WP_029243833.1	hypothetical protein	-
EZZ81_RS04770 (EZZ81_04860)	yacG	1001835..1002044 (-)	210	WP_004887444.1	DNA gyrase inhibitor YacG	-
EZZ81_RS04775 (EZZ81_04865)	coaE	1002041..1002664 (-)	624	WP_025993968.1	dephospho-CoA kinase	-
EZZ81_RS04780 (EZZ81_04870)	pilD	1002661..1003533 (-)	873	WP_029243834.1	A24 family peptidase	Machinery gene
EZZ81_RS04785 (EZZ81_04875)	pilC	1003535..1004752 (-)	1218	WP_029243835.1	type II secretion system F family protein	Machinery gene
EZZ81_RS04790 (EZZ81_04880)	pilB	1004755..1006455 (-)	1701	WP_029243836.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EZZ81_RS04795 (EZZ81_04885)	pilA2	1006681..1007124 (+)	444	WP_029243837.1	pilin	Machinery gene
EZZ81_RS04800 (EZZ81_04890)	-	1007319..1007780 (+)	462	WP_029243838.1	hypothetical protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31940.11 Da
• Isoelectric Point: 7.2387

>NTDB_id=349141 EZZ81_RS04780 WP_029243834.1 1002661..1003533(-) (pilD) [Pseudomonas viridiflava strain Psy35]
MPLLDFLASSTLAFVIFIGVLGLLIGSFLNVVVYRLPKMMEHDWKAQSREMLGLPAEPEQPTFNLILPHSRCPQCAHQIR
PWENLPVVSYLMLGGKCSQCKAPISKRYPLVELVCAVLSAYVAWHFGFGWQTAAMLVLSWGLLAMSLIDADTQLLPDSLV
LPLMWLGLIVNAFGLFTSLSDALWGAVAGYLSLWSVFWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMMRLRNVESGTPIPFGPYLAIAGWIALLWGGQITDSYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=349141 EZZ81_RS04780 WP_029243834.1 1002661..1003533(-) (pilD) [Pseudomonas viridiflava strain Psy35]
ATGCCCCTCCTCGACTTTCTGGCCAGCTCAACGCTGGCCTTCGTTATTTTCATTGGCGTACTCGGTCTCCTGATCGGAAG
CTTCCTCAACGTCGTGGTCTACCGCTTACCCAAAATGATGGAGCACGACTGGAAAGCCCAGTCGCGGGAAATGCTCGGCC
TGCCCGCCGAGCCTGAACAGCCCACCTTCAACCTGATCCTCCCCCACTCCCGCTGCCCGCAATGCGCGCATCAGATCCGT
CCTTGGGAAAACCTGCCGGTGGTCAGCTACCTGATGCTTGGTGGCAAGTGTTCGCAATGCAAGGCACCGATCAGCAAGCG
CTATCCGCTGGTCGAGCTGGTCTGTGCGGTGTTGTCGGCCTATGTGGCCTGGCATTTCGGCTTTGGTTGGCAGACGGCGG
CAATGCTGGTGCTGAGTTGGGGCTTGCTGGCGATGAGCCTGATAGACGCCGACACCCAGCTGCTGCCTGACTCACTGGTA
TTGCCGTTGATGTGGCTGGGCCTGATCGTCAACGCGTTTGGCCTGTTCACGTCGTTAAGCGACGCTTTGTGGGGTGCCGT
GGCGGGGTATCTGTCGTTGTGGTCGGTGTTCTGGCTGTTCAAGCTGATCACGGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAACTGCTGGCCATGCTCGGGGCGTGGGGCGGCTGGCAGATCCTCCCGCTGACGATCCTGCTGTCATCGCTGGTGGGG
GCCATTCTTGGCGTGATCATGATGCGATTGCGCAATGTCGAATCCGGTACTCCGATCCCCTTCGGTCCTTATCTGGCCAT
CGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	54.945	94.138	0.517
pilD	Vibrio cholerae strain A1552	54.212	94.138	0.51
pilD	Acinetobacter baumannii D1279779	51.22	98.966	0.507
pilD	Acinetobacter nosocomialis M2	50.523	98.966	0.5
pilD	Neisseria gonorrhoeae MS11	52.756	87.586	0.462