Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EYZ66_RS11960 Genome accession   NZ_CP036423
Coordinates   2636260..2637759 (+) Length   499 a.a.
NCBI ID   WP_009575716.1    Uniprot ID   F3L1S9
Organism   Aequoribacter fuscus strain IMCC3088     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2631260..2642759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYZ66_RS11930 (EYZ66_11935) - 2631911..2632618 (+) 708 WP_009575883.1 HAD family hydrolase -
  EYZ66_RS11935 (EYZ66_11940) - 2632819..2633157 (-) 339 WP_160195684.1 P-II family nitrogen regulator -
  EYZ66_RS11940 (EYZ66_11945) - 2633302..2634537 (-) 1236 WP_009575711.1 ammonium transporter -
  EYZ66_RS11945 (EYZ66_11950) glnK 2634568..2634906 (-) 339 WP_009575713.1 P-II family nitrogen regulator -
  EYZ66_RS11950 (EYZ66_11955) - 2634961..2635644 (-) 684 WP_009575714.1 TorF family putative porin -
  EYZ66_RS11955 (EYZ66_11960) - 2635963..2636202 (+) 240 WP_009575715.1 accessory factor UbiK family protein -
  EYZ66_RS11960 (EYZ66_11965) comM 2636260..2637759 (+) 1500 WP_009575716.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EYZ66_RS11965 (EYZ66_11970) - 2637815..2639809 (+) 1995 WP_009575717.1 UvrD-helicase domain-containing protein -
  EYZ66_RS11970 (EYZ66_11975) - 2639857..2640267 (-) 411 WP_009575718.1 c-type cytochrome -
  EYZ66_RS11975 (EYZ66_11980) - 2640394..2641014 (+) 621 WP_009575719.1 glutathione S-transferase family protein -
  EYZ66_RS11980 (EYZ66_11985) - 2641031..2642032 (+) 1002 WP_050793407.1 DUF3080 family protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53589.36 Da        Isoelectric Point: 8.1051

>NTDB_id=348852 EYZ66_RS11960 WP_009575716.1 2636260..2637759(+) (comM) [Aequoribacter fuscus strain IMCC3088]
MQLSVIKARALVGIDAPLVRVETHLSSGLPGFNLVGMPETTVRESKDRVRSAIINSHFDFPDAKITVNLAPADLPKEGGR
FDLAIALGVLAASGQINTQKLSQYEFIGELGLDGALHPVTGVLASAHACATSDCKLMVSQACAPQAAQVPDCFVMGAESL
LDVCAQLRNAKPVRIQSNRATLAHKRLPDLSEVRGQLEAKRALEIAAAGGHNVFLYGPPGTGKTLLASRLAGLLPPLSTA
DLLEVRLIQDLMTSNSASDERPFRAPHHSASAVALVGGGSKPKPGEITLAHRGVLFLDEIAEFPRATLDMLREPLESGSV
RINRAKASVTYPANFQLIAAANPCPCGYLGDPERRCRCSNDQIERYQARLSGPLLDRIDLFCRVERLDARTLLEQGDHGE
ASAIVAARVAQAQACAQQRQNALNARAQGDTLANEHCSDAAKHTLTLAADKFQLSGRSVHRALRVARTIADLADAKMIEK
NHMLEALSYRQINFNRGPF

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=348852 EYZ66_RS11960 WP_009575716.1 2636260..2637759(+) (comM) [Aequoribacter fuscus strain IMCC3088]
ATGCAATTATCTGTGATAAAAGCCCGTGCTTTGGTGGGCATCGATGCCCCCTTAGTGCGAGTAGAAACCCACTTGAGTAG
CGGCTTACCCGGCTTCAACTTAGTGGGTATGCCCGAGACCACCGTGCGCGAGAGCAAAGATCGCGTTCGCAGCGCAATTA
TTAACAGCCATTTTGATTTTCCCGATGCCAAAATCACCGTTAATCTTGCGCCAGCCGATTTGCCCAAAGAAGGTGGCCGC
TTTGATTTAGCCATTGCGCTGGGCGTTCTCGCTGCGTCAGGCCAAATCAATACACAAAAATTATCGCAATACGAGTTTAT
CGGTGAATTGGGTCTTGATGGTGCATTGCACCCAGTTACGGGCGTGCTGGCCAGCGCCCACGCGTGCGCCACTTCAGACT
GCAAACTCATGGTTAGCCAGGCCTGTGCACCTCAAGCCGCCCAAGTGCCCGACTGTTTCGTGATGGGCGCAGAATCTCTG
CTCGATGTCTGCGCGCAATTGCGCAACGCCAAACCTGTCCGCATACAAAGTAACCGGGCAACACTTGCACATAAAAGACT
GCCCGATCTGAGTGAGGTAAGAGGCCAACTCGAGGCGAAACGCGCGCTCGAGATCGCCGCAGCAGGCGGACATAATGTGT
TCTTATATGGCCCACCGGGGACCGGAAAAACCCTGCTCGCGAGCCGCCTTGCCGGTCTCCTGCCGCCGCTGAGCACAGCT
GATTTATTGGAGGTACGGCTTATTCAGGACTTAATGACCAGTAATAGTGCAAGTGATGAACGCCCATTTCGTGCACCTCA
CCACAGCGCTAGCGCTGTCGCTCTGGTGGGCGGCGGTTCCAAACCCAAACCGGGGGAAATCACCTTGGCCCATCGCGGTG
TATTATTTTTGGATGAGATCGCAGAGTTCCCGCGCGCAACCTTGGATATGTTGCGTGAACCCCTAGAATCGGGGTCGGTG
CGCATTAATCGCGCTAAAGCTAGCGTCACCTACCCCGCTAACTTCCAGTTAATTGCGGCGGCCAACCCTTGCCCCTGCGG
ATATTTGGGTGATCCAGAGCGCCGTTGCCGATGCAGCAACGATCAGATCGAGCGCTATCAGGCGCGTTTATCGGGACCTC
TGCTTGACCGCATCGATTTGTTTTGTCGAGTCGAACGCCTAGATGCCAGAACCCTATTGGAACAGGGTGATCATGGGGAA
GCATCGGCAATCGTAGCCGCTCGAGTCGCTCAAGCGCAGGCCTGCGCACAGCAACGCCAAAACGCACTGAACGCCAGAGC
CCAAGGCGACACCCTAGCAAATGAACACTGCAGCGATGCCGCCAAACACACGCTGACTCTGGCGGCTGATAAATTTCAGT
TATCGGGGCGCTCGGTGCACAGAGCCTTGCGAGTGGCTCGGACCATCGCCGATCTTGCGGATGCGAAGATGATCGAAAAA
AACCACATGCTAGAAGCGCTCAGCTACCGACAAATTAACTTTAACAGAGGTCCTTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-490)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F3L1S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.69

100

0.521
  comM Vibrio cholerae strain A1552

49.9

100

0.499
  comM Glaesserella parasuis strain SC1401

47.525

100

0.481
  comM Haemophilus influenzae Rd KW20

47.505

100

0.477
  comM Legionella pneumophila str. Paris

46.386

99.8

0.463
  comM Legionella pneumophila strain ERS1305867

46.386

99.8

0.463
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.095

100

0.427

Multiple sequence alignment