Detailed information NTG0034861

Bioinformatically predicted

Overview

• Name: comA
• Type: Regulator
• Locus tag: JDM1_RS01740
• Genome accession: NC_012984
• Coordinates: 374218..376368 (+)
• Length: 716 a.a.
• NCBI ID: WP_015825125.1
• Uniprot ID: -
• Organism: Lactiplantibacillus plantarum JDM1
• Function: processing and transport of ComC (predicted from homology) Competence regulation

Genomic Context

Location: 369218..381368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JDM1_RS15620	-	370162..370335 (+)	174	WP_154766382.1	hypothetical protein	-
JDM1_RS01715 (JDM1_0349)	-	370348..371688 (+)	1341	WP_015825121.1	GHKL domain-containing protein	-
JDM1_RS01720 (JDM1_0350)	-	371689..372432 (+)	744	WP_015825122.1	response regulator transcription factor	-
JDM1_RS15765	-	372726..373226 (-)	501	WP_225868584.1	CPBP family intramembrane glutamic endopeptidase	-
JDM1_RS01730 (JDM1_0352)	plnF	373598..373756 (-)	159	WP_015825124.1	two-peptide bacteriocin plantaricin EF subunit PlnF	-
JDM1_RS01735 (JDM1_0353)	plnE	373781..373951 (-)	171	WP_003641985.1	two-peptide bacteriocin plantaricin EF subunit PlnE	-
JDM1_RS01740 (JDM1_0354)	comA	374218..376368 (+)	2151	WP_015825125.1	peptide cleavage/export ABC transporter	Regulator
JDM1_RS01745 (JDM1_0355)	-	376384..377760 (+)	1377	WP_015825126.1	HlyD family secretion protein	-
JDM1_RS01750 (JDM1_0356)	-	377850..378539 (+)	690	WP_015825127.1	CPBP family intramembrane glutamic endopeptidase	-
JDM1_RS01755 (JDM1_0357)	-	378820..379275 (+)	456	WP_015825128.1	CPBP family intramembrane glutamic endopeptidase	-
JDM1_RS01760 (JDM1_0358)	-	379362..380042 (+)	681	WP_015825129.1	CPBP family intramembrane glutamic endopeptidase	-
JDM1_RS01765 (JDM1_0359)	-	380136..380810 (+)	675	WP_015825130.1	CPBP family intramembrane glutamic endopeptidase	-
JDM1_RS01770 (JDM1_0360)	-	380958..381248 (+)	291	WP_027822758.1	type II toxin-antitoxin system RelE/ParE family toxin	-

Sequence

Protein

• Length: 716 a.a.
• Molecular weight: 79938.63 Da
• Isoelectric Point: 6.6531

>NTDB_id=34861 JDM1_RS01740 WP_015825125.1 374218..376368(+) (comA) [Lactiplantibacillus plantarum JDM1]
MHWRNYVAQVDEMDCGVAALAMILKNYGSTTSLAYLRNIAKTSLEGTTALGLVKTAEKLGFETKAIQADMSLFEVQDLPL
PFIVHVTKNGDLQHFYVVVKTSKTHVVIADPDPTVAVISMSKERFESEWSGVALFFAPKSEYKPVKQDKGSLWGFIPSLL
KQRRLVINIVLAAVLITIISICGSYFLQAVIDTYIPNNMHSTLAVVGIGLIVFYTFQAIFTYAQNFLLAVLGQRLSIEII
LGYIRHVFELPMSFFATRRTGEIVSRFTDASKIIDALASTIVSLFLDVSIVIIMGAILVIQNMTLFWITLLSLPIYAVVI
LAFNKSFERLNQKEMESNAILSSAIIEDLHGIETVKALNGETERYQKIDSEFVDYLRKSLAYLKADTLQQALKLFIQLVL
EVVVLWVGANLVIHNQLSVGELMTYNALLAYFVNPLQNIINLQTKLQSAKVANNRLNEVYLVASEFEASRPIHNESQLNG
DIKLQGVSYRYGYGENVLDDVNLTIRQHDKVAIVGMSGSGKSTLVKLLIDFYQPNSGDVILNGFNVKNIDKHTLRTHINY
IPQEPYIFSATIEENLRLGNRSGITEKDIAKACQLALIDTDINKMAMQYQTKLDENGNTLSGGQRQRLTIARALLSPAQV
LIFDESTSGLDAITEKQLIDNLVAMTDKTIIFIAHRLSIAKRTNHIIVLHDGRVAEEGTHAALLNEHGYYYDLINS

Nucleotide

• Length: 2151 bp

>NTDB_id=34861 JDM1_RS01740 WP_015825125.1 374218..376368(+) (comA) [Lactiplantibacillus plantarum JDM1]
ATGCATTGGAGAAACTATGTTGCGCAAGTTGACGAGATGGACTGTGGGGTCGCAGCTTTAGCAATGATTTTGAAAAATTA
TGGTTCGACAACATCATTGGCCTATCTAAGAAATATTGCTAAAACGAGTTTAGAAGGGACTACGGCATTAGGATTAGTAA
AAACGGCCGAAAAGTTAGGTTTTGAAACCAAAGCAATTCAAGCAGATATGAGTCTTTTCGAGGTACAAGATTTACCATTG
CCATTCATTGTGCATGTTACCAAAAATGGGGATCTACAGCATTTTTATGTCGTTGTAAAAACCTCGAAAACACATGTCGT
GATTGCTGATCCGGACCCAACAGTTGCGGTTATCAGTATGTCAAAGGAACGGTTTGAAAGCGAATGGTCCGGAGTTGCCC
TTTTCTTTGCACCGAAGTCGGAATATAAGCCAGTTAAGCAAGATAAGGGCTCACTATGGGGATTTATTCCAAGCTTATTA
AAGCAGCGCCGACTGGTTATTAATATTGTGCTTGCTGCAGTTTTAATCACGATTATTAGTATCTGTGGGTCTTATTTCTT
ACAAGCGGTGATTGATACTTATATTCCCAATAATATGCACAGTACATTGGCAGTGGTGGGCATTGGTCTAATCGTTTTTT
ATACCTTTCAGGCTATCTTTACTTATGCCCAGAATTTTTTATTGGCGGTTTTAGGTCAACGACTTTCGATTGAAATTATT
TTAGGCTATATTCGGCACGTCTTTGAATTGCCAATGAGTTTTTTTGCCACTCGGCGGACGGGGGAAATTGTTTCGAGGTT
TACGGATGCCAGTAAGATTATTGATGCGTTAGCTAGCACAATTGTTTCGCTGTTTTTAGATGTCAGCATCGTTATTATTA
TGGGGGCAATCTTGGTAATCCAGAATATGACACTTTTTTGGATTACGTTACTCTCGTTGCCAATCTACGCGGTTGTCATC
TTAGCCTTTAATAAATCCTTTGAACGATTGAATCAAAAGGAAATGGAGAGCAATGCTATTTTGAGTTCAGCCATTATTGA
GGATCTTCATGGGATTGAAACTGTTAAGGCGCTGAATGGTGAGACGGAACGTTATCAGAAAATTGATTCAGAATTTGTTG
ATTATCTACGTAAGAGTTTGGCCTATCTTAAAGCGGATACTTTGCAACAGGCATTAAAACTGTTTATACAGTTAGTCTTA
GAAGTTGTTGTTCTATGGGTGGGCGCCAATCTCGTCATTCATAATCAGTTATCAGTTGGGGAGCTCATGACATATAATGC
TTTATTAGCCTATTTTGTTAATCCACTACAGAATATTATTAATTTGCAGACTAAGCTTCAAAGCGCTAAGGTCGCTAACA
ACCGGTTAAATGAAGTGTATTTGGTCGCTAGTGAATTTGAGGCGTCACGGCCAATTCATAATGAAAGTCAATTAAATGGT
GATATTAAGTTACAAGGGGTCAGCTATCGTTATGGTTACGGTGAAAATGTCTTAGATGATGTTAATTTGACGATTCGACA
ACATGATAAGGTTGCAATTGTGGGGATGAGTGGCTCTGGCAAGTCCACGTTAGTTAAATTGCTTATTGATTTTTATCAAC
CAAATAGTGGTGATGTCATATTGAACGGCTTCAACGTTAAGAACATCGATAAGCATACATTGCGGACCCATATTAACTAC
ATCCCGCAGGAACCATACATCTTTTCAGCGACCATTGAAGAAAATTTAAGATTAGGTAATCGCAGCGGTATTACTGAGAA
AGATATTGCGAAGGCTTGCCAATTGGCGTTAATTGATACGGATATTAATAAAATGGCCATGCAATACCAAACTAAGCTAG
ATGAGAATGGTAATACACTATCAGGTGGTCAGCGACAACGATTAACGATTGCGAGAGCGTTATTATCACCCGCTCAAGTA
TTGATATTTGATGAGTCGACGAGTGGACTGGATGCAATTACTGAAAAACAATTAATCGATAATTTAGTGGCAATGACTGA
CAAGACGATTATTTTTATTGCCCACCGGTTGTCGATTGCAAAGCGGACGAATCATATCATCGTTCTGCATGATGGTCGGG
TCGCTGAAGAGGGGACCCATGCGGCATTGTTGAATGAACATGGTTACTATTACGACTTGATCAATAGCTGA

Domains

Predicted by InterproScan.

• Peptidase C39 family (Peptidase_C39) (5-140)

• ABC transporter transmembrane region (ABC_membrane) (166-436)

• ABC transporter (ABC_tran) (498-648)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Streptococcus mitis NCTC 12261	58.906	99.581	0.587
comA	Streptococcus pneumoniae Rx1	58.626	99.581	0.584
comA	Streptococcus pneumoniae D39	58.626	99.581	0.584
comA	Streptococcus pneumoniae R6	58.626	99.581	0.584
comA	Streptococcus pneumoniae TIGR4	58.485	99.581	0.582
comA	Streptococcus mitis SK321	58.345	99.581	0.581
comA	Streptococcus gordonii str. Challis substr. CH1	57.103	100	0.573
comA/nlmT	Streptococcus mutans UA159	54.596	100	0.547