Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   GIY05_RS12270 Genome accession   NZ_CP045916
Coordinates   2576890..2577561 (+) Length   223 a.a.
NCBI ID   WP_003097702.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CF39S     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2571890..2582561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIY05_RS12235 ppyR 2572363..2572620 (+) 258 WP_003090502.1 psl/pyoverdine operon transcriptional regulator PpyR -
  GIY05_RS12240 - 2572607..2573800 (+) 1194 WP_003122598.1 NnrS family protein -
  GIY05_RS12245 - 2573801..2574067 (-) 267 WP_003115326.1 DUF5329 domain-containing protein -
  GIY05_RS12250 - 2574051..2574944 (-) 894 WP_003115327.1 hypothetical protein -
  GIY05_RS12255 - 2574971..2576053 (-) 1083 WP_003097706.1 hypothetical protein -
  GIY05_RS12260 - 2576268..2576576 (+) 309 WP_003090497.1 PepSY domain-containing protein -
  GIY05_RS12265 - 2576576..2576890 (+) 315 WP_003097704.1 PepSY domain-containing protein -
  GIY05_RS12270 ciaR 2576890..2577561 (+) 672 WP_003097702.1 two-component system response regulator CarR Regulator
  GIY05_RS12275 carS 2577558..2578895 (+) 1338 WP_003097701.1 two-component system sensor histidine kinase CarS -
  GIY05_RS12280 - 2578986..2579294 (+) 309 WP_003097699.1 hypothetical protein -
  GIY05_RS12285 - 2579299..2581443 (-) 2145 WP_003097696.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24759.22 Da        Isoelectric Point: 5.8445

>NTDB_id=348461 GIY05_RS12270 WP_003097702.1 2576890..2577561(+) (ciaR) [Pseudomonas aeruginosa strain CF39S]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRSLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide


Download         Length: 672 bp        

>NTDB_id=348461 GIY05_RS12270 WP_003097702.1 2576890..2577561(+) (ciaR) [Pseudomonas aeruginosa strain CF39S]
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGTCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATCATCCTCGACCTCGGCC
TGCCCGGGCGTCCCGGCCTGGAGATACTCCAGGAGTGGCGTAGCCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTACCTGACCAAGCCGTTCCATCCGGAAGA
GCTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC
GCCTGGACGAGCAGCGCCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG
GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

37.727

98.655

0.372
  ciaR Streptococcus pneumoniae Rx1

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae D39

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae R6

37.273

98.655

0.368
  ciaR Streptococcus pneumoniae TIGR4

37.273

98.655

0.368
  micA Streptococcus pneumoniae Cp1015

35.683

100

0.363
  vicR Streptococcus mutans UA159

35.526

100

0.363

Multiple sequence alignment