Detailed information NTG0034837

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HELPY_RS00225
• Genome accession: NC_012973
• Coordinates: 38188..39177 (+)
• Length: 329 a.a.
• NCBI ID: WP_012777816.1
• Uniprot ID: -
• Organism: Helicobacter pylori B38
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33188..44177

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HELPY_RS00195 (HELPY_0032)	panD	34594..34947 (+)	354	WP_000142262.1	aspartate 1-decarboxylase	-
HELPY_RS00200 (HELPY_0033)	-	34950..35252 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HELPY_RS00205 (HELPY_0034)	-	35252..36256 (+)	1005	WP_000468457.1	PDZ domain-containing protein	-
HELPY_RS00210 (HELPY_0035)	comB6	36264..37319 (+)	1056	WP_000786644.1	P-type conjugative transfer protein TrbL	Machinery gene
HELPY_RS00215	comB7	37335..37448 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HELPY_RS00220 (HELPY_0036)	comB8	37445..38188 (+)	744	WP_001208405.1	type IV secretion system protein	Machinery gene
HELPY_RS00225 (HELPY_0037)	comB9	38188..39177 (+)	990	WP_012777816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HELPY_RS00230 (HELPY_0038)	comB10	39170..40300 (+)	1131	WP_001045895.1	DNA type IV secretion system protein ComB10	Machinery gene
HELPY_RS00235 (HELPY_0039)	-	40371..41783 (+)	1413	WP_000694863.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HELPY_RS00240 (HELPY_0040)	gmd	41824..42969 (+)	1146	WP_000659814.1	GDP-mannose 4,6-dehydratase	-
HELPY_RS00245 (HELPY_0041)	-	42962..43894 (+)	933	WP_001002506.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37989.76 Da
• Isoelectric Point: 9.5436

>NTDB_id=34837 HELPY_RS00225 WP_012777816.1 38188..39177(+) (comB9) [Helicobacter pylori B38]
MRKVLYALMGFLLTFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQKENKENTLENAPTNNKPLKEETLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYC
LGICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCI
RFVKKGKDE

Nucleotide

• Length: 990 bp

>NTDB_id=34837 HELPY_RS00225 WP_012777816.1 38188..39177(+) (comB9) [Helicobacter pylori B38]
ATGCGTAAGGTTTTATATGCCCTCATGGGCTTTTTGTTGACTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATCTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTAATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAAAG
CAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAGGGCAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTATTCTAACGCTTTTTTGAAGCCCCAAAAAGAAAATAAAGAAAATACCCTTGAAAACGCTCCCACAAACAACAAGCC
CTTAAAAGAAGAAACCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGACAACA
CCAATGCGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGT
TTAGGGATTTGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAA
ATTTGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACTA
GGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATC
CGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.77	100	0.964