Detailed information NTG0034834

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O3Y_RS02815
• Genome accession: NC_016944
• Coordinates: 564395..565402 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae IEC224
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 559395..570402

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O3Y_RS02780 (O3Y_02490)	ftsB	559446..559730 (+)	285	WP_001263189.1	cell division protein FtsB	-
O3Y_RS02785 (O3Y_02495)	ispD	559727..560425 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O3Y_RS02790 (O3Y_02500)	ispF	560422..560898 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O3Y_RS02795 (O3Y_02505)	truD	560928..562013 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
O3Y_RS02800 (O3Y_02510)	surE	562015..562767 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
O3Y_RS02805 (O3Y_02515)	-	562760..563386 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
O3Y_RS02810 (O3Y_02520)	nlpD	563386..564321 (+)	936	WP_000177568.1	murein hydrolase activator NlpD	-
O3Y_RS02815 (O3Y_02525)	rpoS	564395..565402 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
O3Y_RS02820 (O3Y_02530)	mutS	565495..568083 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
O3Y_RS02825 (O3Y_02535)	cysM	568351..569238 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=34834 O3Y_RS02815 WP_000116737.1 564395..565402(+) (rpoS) [Vibrio cholerae IEC224]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=34834 O3Y_RS02815 WP_000116737.1 564395..565402(+) (rpoS) [Vibrio cholerae IEC224]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1