Detailed information NTG0034834

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HELPY_RS00210
• Genome accession: NC_012973
• Coordinates: 36264..37319 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786644.1
• Uniprot ID: -
• Organism: Helicobacter pylori B38
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31264..42319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HELPY_RS00180 (HELPY_0029)	-	31676..32089 (+)	414	WP_001023005.1	universal stress protein	-
HELPY_RS00185 (HELPY_0030)	-	32104..32379 (+)	276	WP_000784922.1	ATP-dependent Clp protease adaptor ClpS	-
HELPY_RS00190 (HELPY_0031)	-	32379..34604 (+)	2226	WP_001051516.1	AAA family ATPase	-
HELPY_RS00195 (HELPY_0032)	panD	34594..34947 (+)	354	WP_000142262.1	aspartate 1-decarboxylase	-
HELPY_RS00200 (HELPY_0033)	-	34950..35252 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HELPY_RS00205 (HELPY_0034)	-	35252..36256 (+)	1005	WP_000468457.1	PDZ domain-containing protein	-
HELPY_RS00210 (HELPY_0035)	comB6	36264..37319 (+)	1056	WP_000786644.1	P-type conjugative transfer protein TrbL	Machinery gene
HELPY_RS00215	comB7	37335..37448 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HELPY_RS00220 (HELPY_0036)	comB8	37445..38188 (+)	744	WP_001208405.1	type IV secretion system protein	Machinery gene
HELPY_RS00225 (HELPY_0037)	comB9	38188..39177 (+)	990	WP_012777816.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HELPY_RS00230 (HELPY_0038)	comB10	39170..40300 (+)	1131	WP_001045895.1	DNA type IV secretion system protein ComB10	Machinery gene
HELPY_RS00235 (HELPY_0039)	-	40371..41783 (+)	1413	WP_000694863.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39656.58 Da
• Isoelectric Point: 9.0419

>NTDB_id=34834 HELPY_RS00210 WP_000786644.1 36264..37319(+) (comB6) [Helicobacter pylori B38]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATHLSANLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=34834 HELPY_RS00210 WP_000786644.1 36264..37319(+) (comB6) [Helicobacter pylori B38]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGTGCGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGTGCACTTTTAGAGGCGTTATTGTTTGTGGGGTTTTTTGCGCTGTTTAATTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCAGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCCATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.442	100	0.954