Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HELPY_RS00215 | Genome accession | NC_012973 |
| Coordinates | 37335..37448 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori B38 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32335..42448
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HELPY_RS00190 (HELPY_0031) | - | 32379..34604 (+) | 2226 | WP_001051516.1 | AAA family ATPase | - |
| HELPY_RS00195 (HELPY_0032) | panD | 34594..34947 (+) | 354 | WP_000142262.1 | aspartate 1-decarboxylase | - |
| HELPY_RS00200 (HELPY_0033) | - | 34950..35252 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HELPY_RS00205 (HELPY_0034) | - | 35252..36256 (+) | 1005 | WP_000468457.1 | PDZ domain-containing protein | - |
| HELPY_RS00210 (HELPY_0035) | comB6 | 36264..37319 (+) | 1056 | WP_000786644.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HELPY_RS00215 | comB7 | 37335..37448 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HELPY_RS00220 (HELPY_0036) | comB8 | 37445..38188 (+) | 744 | WP_001208405.1 | type IV secretion system protein | Machinery gene |
| HELPY_RS00225 (HELPY_0037) | comB9 | 38188..39177 (+) | 990 | WP_012777816.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HELPY_RS00230 (HELPY_0038) | comB10 | 39170..40300 (+) | 1131 | WP_001045895.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HELPY_RS00235 (HELPY_0039) | - | 40371..41783 (+) | 1413 | WP_000694863.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=34835 HELPY_RS00215 WP_001217873.1 37335..37448(+) (comB7) [Helicobacter pylori B38]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=34835 HELPY_RS00215 WP_001217873.1 37335..37448(+) (comB7) [Helicobacter pylori B38]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |