Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MSIP34_RS12980 Genome accession   NC_012969
Coordinates   2723516..2725006 (-) Length   496 a.a.
NCBI ID   WP_015831063.1    Uniprot ID   -
Organism   Methylovorus glucosotrophus SIP3-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2718516..2730006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSIP34_RS12975 (Msip34_2585) - 2722459..2723502 (-) 1044 WP_015831062.1 VIT1/CCC1 transporter family protein -
  MSIP34_RS12980 (Msip34_2586) comM 2723516..2725006 (-) 1491 WP_015831063.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MSIP34_RS12985 (Msip34_2587) - 2725016..2725282 (-) 267 WP_015831064.1 accessory factor UbiK family protein -
  MSIP34_RS12990 (Msip34_2588) - 2725525..2726349 (+) 825 WP_015831065.1 TorF family putative porin -
  MSIP34_RS12995 (Msip34_2589) glnK 2726447..2726785 (+) 339 WP_013443291.1 P-II family nitrogen regulator -
  MSIP34_RS13000 (Msip34_2590) - 2726798..2728237 (+) 1440 WP_013443292.1 ammonium transporter -
  MSIP34_RS13005 (Msip34_2591) gshA 2728656..2729933 (+) 1278 WP_015831066.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53639.67 Da        Isoelectric Point: 7.7617

>NTDB_id=34807 MSIP34_RS12980 WP_015831063.1 2723516..2725006(-) (comM) [Methylovorus glucosotrophus SIP3-4]
MSLAVIKSRALCGMDAPPVDVEVHLANGLPSFTIVGLPEAEVKESKDRVRAALQTAQFEFPARRITVNLAPADLPKESGR
YDLPIAIGILAASGQLPIEGLAQYEMAGELALTGELRPVKGALAMTYKAWRDGRAFILPEASAAEAALVTDAQILPASSL
LAVCAHLLGQSPLALQQPEVPSTTLAYADFADVKGQAHAKRALEVAAAGGHSILMQGPPGTGKSMLAARLPGILPAMTEE
EALESAAIQSLNGAFRASAWRQRPYRAPHHTASAVALVGGGSVPRPGEISLAHHGILFLDEVPEFDRKVLEVLREPLESG
RITISRAARQADFPARFKLVAAMNPCPCGYLGHYNNKCRCTPDQVSRYRHRLSGPLMDRIDMHIEVPALRDDELLARESS
ESSDVVRRRVEAARALQVQRQGKANALLESHEIDIWCELDAQGQALVKQAINRLNLSARAYHRILKLARTIADLARARDI
ATAHVAEAIQYRKHEI

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=34807 MSIP34_RS12980 WP_015831063.1 2723516..2725006(-) (comM) [Methylovorus glucosotrophus SIP3-4]
ATGTCACTTGCGGTCATTAAAAGTCGTGCATTGTGTGGCATGGATGCACCACCAGTGGATGTGGAAGTGCACCTTGCCAA
TGGATTGCCCAGCTTTACGATAGTCGGCTTACCCGAAGCTGAGGTGAAGGAGAGCAAAGATAGAGTACGCGCTGCCTTGC
AGACGGCGCAGTTCGAATTTCCTGCTCGCCGCATTACGGTCAACCTAGCGCCCGCCGATCTTCCCAAGGAAAGTGGGCGC
TATGATTTGCCGATCGCGATCGGGATTCTGGCGGCGTCCGGCCAATTGCCGATAGAGGGTTTGGCGCAATATGAAATGGC
TGGAGAGCTCGCTCTCACCGGGGAGCTGCGCCCCGTCAAAGGGGCCTTGGCCATGACCTATAAAGCCTGGCGCGATGGCC
GGGCTTTTATTTTGCCCGAAGCCAGTGCAGCGGAAGCTGCGCTGGTGACGGATGCGCAGATACTGCCCGCCAGCAGCTTG
CTTGCGGTATGCGCGCATTTGCTTGGTCAGTCGCCGTTGGCATTGCAGCAGCCGGAAGTGCCATCCACCACGCTAGCTTA
TGCTGACTTCGCCGACGTGAAAGGGCAGGCGCATGCCAAGCGTGCTTTGGAAGTGGCGGCGGCAGGCGGGCACAGTATCT
TGATGCAAGGACCGCCGGGCACTGGGAAGTCCATGCTGGCCGCCAGATTGCCAGGTATTTTGCCCGCGATGACCGAAGAA
GAAGCATTGGAATCCGCCGCCATTCAGTCGCTCAACGGCGCGTTTCGAGCAAGCGCTTGGCGGCAGCGGCCTTACCGAGC
GCCACACCACACGGCATCGGCGGTGGCGCTGGTGGGAGGCGGCAGTGTGCCACGCCCGGGCGAAATATCCCTGGCGCACC
ACGGCATTCTGTTTCTGGATGAAGTGCCGGAGTTTGATCGCAAGGTGCTTGAGGTGCTGCGCGAGCCGCTGGAATCCGGA
CGCATCACCATCTCCCGAGCTGCCCGGCAGGCGGACTTCCCCGCGCGCTTCAAGCTGGTAGCCGCGATGAATCCCTGCCC
TTGCGGGTATCTGGGGCATTACAACAATAAATGCCGCTGCACGCCTGACCAGGTGTCGCGCTATCGCCATCGTCTTTCCG
GCCCGCTGATGGATCGTATCGACATGCATATAGAAGTACCTGCCTTGCGCGACGATGAATTGCTGGCGCGTGAGAGCAGT
GAAAGCAGTGATGTGGTGCGTCGCCGTGTCGAGGCTGCGCGTGCGCTGCAAGTGCAACGCCAGGGGAAAGCCAATGCACT
ATTGGAAAGTCATGAGATCGATATCTGGTGCGAGCTGGATGCCCAGGGCCAAGCCTTGGTAAAGCAGGCCATCAATCGTC
TCAACCTGTCCGCCCGGGCGTATCATCGGATATTGAAGCTGGCCCGCACGATTGCCGATCTGGCGCGTGCCAGGGATATC
GCGACTGCGCATGTGGCCGAGGCGATTCAGTACCGCAAGCACGAAATATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.242

100

0.552
  comM Vibrio campbellii strain DS40M4

54.949

99.798

0.548
  comM Haemophilus influenzae Rd KW20

54

100

0.544
  comM Glaesserella parasuis strain SC1401

53

100

0.534
  comM Legionella pneumophila str. Paris

51.4

100

0.518
  comM Legionella pneumophila strain ERS1305867

51.4

100

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.129

100

0.48

Multiple sequence alignment