Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EYC54_RS21230 Genome accession   NZ_CP036252
Coordinates   4469136..4470656 (+) Length   506 a.a.
NCBI ID   WP_131074337.1    Uniprot ID   A0AAJ6KLG4
Organism   Xanthomonas oryzae strain NJ611     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4464136..4475656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC54_RS21200 (EYC54_21200) - 4465216..4465452 (+) 237 Protein_3850 hypothetical protein -
  EYC54_RS21210 (EYC54_21210) - 4465715..4467700 (-) 1986 WP_131078819.1 beta-N-acetylglucosaminidase domain-containing protein -
  EYC54_RS21220 (EYC54_21220) - 4468313..4468687 (-) 375 WP_277623243.1 P-II family nitrogen regulator -
  EYC54_RS21225 (EYC54_21225) - 4468841..4469119 (+) 279 WP_014504991.1 accessory factor UbiK family protein -
  EYC54_RS21230 (EYC54_21230) comM 4469136..4470656 (+) 1521 WP_131074337.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EYC54_RS21240 (EYC54_21240) - 4471131..4471640 (+) 510 WP_131078820.1 lipocalin family protein -
  EYC54_RS21245 (EYC54_21245) - 4471793..4471969 (-) 177 WP_010374782.1 hypothetical protein -
  EYC54_RS21250 (EYC54_21250) - 4472352..4473914 (+) 1563 WP_131074336.1 EAL domain-containing protein -
  EYC54_RS21255 (EYC54_21255) - 4473980..4475101 (-) 1122 WP_131078821.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54011.78 Da        Isoelectric Point: 8.1016

>NTDB_id=347660 EYC54_RS21230 WP_131074337.1 4469136..4470656(+) (comM) [Xanthomonas oryzae strain NJ611]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLDGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=347660 EYC54_RS21230 WP_131074337.1 4469136..4470656(+) (comM) [Xanthomonas oryzae strain NJ611]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTACCGCTTGCCAACGGTGCCGAAGCGGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCGACGGCAGCCAGAAAGCACCTGCAGCCGAATTGGCGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGTATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.719

100

0.567
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Legionella pneumophila str. Paris

52.113

98.221

0.512
  comM Legionella pneumophila strain ERS1305867

52.113

98.221

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.866

100

0.46

Multiple sequence alignment