Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EYR27_RS20965 Genome accession   NZ_CP036251
Coordinates   4499574..4501094 (-) Length   506 a.a.
NCBI ID   WP_029217706.1    Uniprot ID   A0AAP1EYQ6
Organism   Xanthomonas oryzae strain X11-5A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4494574..4506094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR27_RS20940 (EYR27_20940) - 4495094..4496188 (+) 1095 WP_029217705.1 acyl-CoA desaturase -
  EYR27_RS20945 (EYR27_20945) - 4496281..4497843 (-) 1563 WP_019302203.1 EAL domain-containing protein -
  EYR27_RS20950 (EYR27_20950) - 4498226..4498402 (+) 177 WP_019302205.1 hypothetical protein -
  EYR27_RS20955 (EYR27_20955) - 4498589..4499098 (-) 510 WP_019302206.1 lipocalin family protein -
  EYR27_RS20965 (EYR27_20965) comM 4499574..4501094 (-) 1521 WP_029217706.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EYR27_RS20970 (EYR27_20970) - 4501111..4501389 (-) 279 WP_014504991.1 accessory factor UbiK family protein -
  EYR27_RS20975 (EYR27_20975) - 4501543..4501917 (+) 375 WP_019302208.1 P-II family nitrogen regulator -
  EYR27_RS20980 (EYR27_20980) - 4502159..4502350 (-) 192 WP_019302209.1 hypothetical protein -
  EYR27_RS20985 (EYR27_20985) - 4502531..4504516 (+) 1986 WP_019302210.1 beta-N-acetylglucosaminidase domain-containing protein -
  EYR27_RS24145 - 4504865..4505418 (-) 554 Protein_3814 kinase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54066.84 Da        Isoelectric Point: 8.1016

>NTDB_id=347642 EYR27_RS20965 WP_029217706.1 4499574..4501094(-) (comM) [Xanthomonas oryzae strain X11-5A]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGAHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETATITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAAWQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=347642 EYR27_RS20965 WP_029217706.1 4499574..4501094(-) (comM) [Xanthomonas oryzae strain X11-5A]
ATGAGCCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCGCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCCGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCGACGCTCAACGGCAGCCAGAAAGCACCTGCCGCCGAATTGGCGGTGCAGGCGCTCGGCGCGCGCGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGCGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGACCATTACCTCCATCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCGGTCGCCTTGGTTGGCGGTGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGCGTCTTGTTTCTGGACGAGTTGCCTGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGCCTGGTCACGATCTCGCGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGCTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATACGCCGCTATCGCAGCCGTA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGCAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGTGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCACGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.509

98.221

0.506
  comM Legionella pneumophila strain ERS1305867

51.509

98.221

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458

Multiple sequence alignment