Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   KAN02_RS18045 Genome accession   NZ_CP036171
Coordinates   3758387..3759517 (+) Length   376 a.a.
NCBI ID   WP_087606047.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3753387..3764517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS18020 (KAN02_18020) - 3753658..3753864 (-) 207 WP_004711026.1 DUF4199 domain-containing protein -
  KAN02_RS18025 (KAN02_18025) - 3753908..3756022 (-) 2115 WP_087606045.1 TonB-dependent copper receptor -
  KAN02_RS18030 (KAN02_18030) - 3756094..3756522 (-) 429 WP_002054220.1 DUF2946 family protein -
  KAN02_RS18035 (KAN02_18035) def 3756559..3757089 (-) 531 WP_002054252.1 peptide deformylase -
  KAN02_RS18040 (KAN02_18040) tsaP 3757212..3758366 (+) 1155 WP_004711032.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  KAN02_RS18045 (KAN02_18045) dprA 3758387..3759517 (+) 1131 WP_087606047.1 DNA-processing protein DprA Machinery gene
  KAN02_RS18050 (KAN02_18050) - 3759568..3760137 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  KAN02_RS18055 (KAN02_18055) - 3760530..3761450 (-) 921 WP_080660804.1 DMT family transporter -
  KAN02_RS18060 (KAN02_18060) - 3761556..3762209 (-) 654 WP_006581284.1 TetR/AcrR family transcriptional regulator -
  KAN02_RS18065 (KAN02_18065) - 3762344..3763558 (+) 1215 WP_004883889.1 MFS transporter -
  KAN02_RS18070 (KAN02_18070) - 3763580..3764344 (+) 765 WP_004883891.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41765.24 Da        Isoelectric Point: 6.5812

>NTDB_id=347314 KAN02_RS18045 WP_087606047.1 3758387..3759517(+) (dprA) [Acinetobacter nosocomialis strain KAN02]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFVQLIQQV
QQHTDFILTPDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLGEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=347314 KAN02_RS18045 WP_087606047.1 3758387..3759517(+) (dprA) [Acinetobacter nosocomialis strain KAN02]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATTAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTTTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGTACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGCCCGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCGCC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTATTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACGGGTACGGGCCTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTGGGAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCAGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCTATTCCGGGTCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCACAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

95.745

100

0.957

  dprA Acinetobacter baumannii D1279779

95.745

100

0.957

  dprA Acinetobacter baylyi ADP1

70.866

100

0.718

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment