Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KAN02_RS17835 Genome accession   NZ_CP036171
Coordinates   3713052..3714539 (+) Length   495 a.a.
NCBI ID   WP_087605904.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3708052..3719539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS17810 (KAN02_17810) ribD 3708969..3710054 (-) 1086 WP_087605903.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  KAN02_RS17815 (KAN02_17815) nrdR 3710070..3710528 (-) 459 WP_004710970.1 transcriptional regulator NrdR -
  KAN02_RS17820 (KAN02_17820) - 3710689..3712083 (-) 1395 WP_031956165.1 ammonium transporter -
  KAN02_RS17825 (KAN02_17825) glnK 3712141..3712479 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  KAN02_RS17830 (KAN02_17830) - 3712759..3712986 (+) 228 WP_002048939.1 accessory factor UbiK family protein -
  KAN02_RS17835 (KAN02_17835) comM 3713052..3714539 (+) 1488 WP_087605904.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KAN02_RS17840 (KAN02_17840) - 3714569..3715993 (-) 1425 WP_087605905.1 PLP-dependent aminotransferase family protein -
  KAN02_RS17845 (KAN02_17845) - 3716105..3716881 (+) 777 WP_130631347.1 aldolase -
  KAN02_RS17850 (KAN02_17850) - 3716897..3717775 (+) 879 WP_087605907.1 dihydrodipicolinate synthase family protein -
  KAN02_RS17855 (KAN02_17855) - 3717818..3718639 (-) 822 WP_002048960.1 TorF family putative porin -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54637.56 Da        Isoelectric Point: 7.5517

>NTDB_id=347312 KAN02_RS17835 WP_087605904.1 3713052..3714539(+) (comM) [Acinetobacter nosocomialis strain KAN02]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRSISGALTLAMACQQAQHKIVLPQDNSQDISHLPNLECYPVSHL
KEVCEHFLGNTKLSQVQSSSRSHDMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
QETLEVASIYSISNTPHIFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQIKRQNCLNQALSPKQLEQFAVLDDTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLSQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=347312 KAN02_RS17835 WP_087605904.1 3713052..3714539(+) (comM) [Acinetobacter nosocomialis strain KAN02]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGCTTACATGCGCCTCTCATTGAAGTAGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTAACGATCGTAGGGCTTGCTGAAGCAGCAGTCAGGGAGAGTAAGGACAGGGTTCGCTCAGCAATTA
TTAATAGTGGATTTCAGTTTCCGACTAAACGGCTGACTATTAATCTTGCTCCCGCAGATTTGCCCAAAGATGGTTCACGT
TTAGATTTACCGATTGCATTAGGGATATTAATTGCCTCAGGTCAGCTTCCAGAGAACTGCACTGAAGACTTTGAATTTAT
TGGAGAGTTAGCACTAGATGGTCATGTAAGATCTATTTCAGGTGCTTTAACTTTGGCAATGGCCTGCCAACAAGCCCAGC
ATAAAATTGTTTTACCCCAAGATAATAGTCAGGATATTAGTCATTTACCAAATCTTGAGTGTTATCCGGTTAGTCATTTA
AAAGAAGTTTGTGAACACTTTTTAGGAAATACCAAGCTATCTCAGGTGCAATCATCTTCCCGCTCACATGACATGCCGTA
TAAATTTGACCTTGCTGATGTAAAAGGTCAGCTACGTCCACGTCGTGCACTGGAAATTGCAGCTGCTGGAGGGCACTCCC
TGCTCTTTAAAGGACCACCGGGTACAGGTAAGACTTTACTCGCCTCACGTCTTCCTTCAATTTTACCACCACTTTCTACT
CAAGAAACGCTTGAAGTTGCGAGTATTTATTCGATTTCAAATACACCGCATATTTTTGGACAGCGCCCTTTTCGTGCACC
CCACCATACAGCCTCAGCAATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCACTTAG
GGGTTCTCTTTTTAGATGAATTACCCGAGTTTGATCGCAAAGTATTAGAAGTCTTACGCCAGCCGCTTGAGTCAAAAGAA
ATTATCATTTCACGGGCAGCCCGGCAAATTACCTATCCTGCCAACTTTCAGCTTATAGCAGCAATGAACCCCTGCCCATG
TGGTTACGCATTTAATCAAGACAGTCGTTGTCAGTGTTCACCCGAAAGTATTAAGCGCTATCAAAATCGTATATCGGGAC
CATTACTTGACCGCATCGATTTACATATCGATGTACCGCCATTAAAAGCTCAGGAACTACAAGACCCAACACCTGCTGAG
GATTCAACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATAAAAAGGCAGAATTGTTTAAATCAAGCGCT
TTCACCAAAACAATTAGAACAATTCGCTGTCCTAGATGACACTTCACAGCGAATGATTGAAATGGCACAGCAACGTTTAA
ATTTATCTGCACGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGTCTCAAAGTGAGATGATTCAA
AGTCCTCACCTTACAGAAGCTCTCTCCTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.21

100

0.513
  comM Glaesserella parasuis strain SC1401

50.8

100

0.513
  comM Haemophilus influenzae Rd KW20

49.098

100

0.495
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  comM Vibrio campbellii strain DS40M4

48.485

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.8

100

0.473

Multiple sequence alignment